Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01184 ATGCCTGATGGTTGCAGTATCAGAGCCATTTGGATCTTCAGCAACTTCGACGCTGTTATTTTCTCCAGGAGGTTTCCAGTGGTAGAGAAGCGCTGGCGAACAGCATGCAAGACCGAGAATGATAGATGTATATCAGATGACCTTAACTCTAGCGTGTCTCCAGTACTTCCTAACGATTCAGAGTTAGCTGCTGCATTTGTTGAGAGAAAGAACAGAGAGGGATCTGCCGGTGGGTTTGGCATTCGCATTATTCAGTCATCTGAGGGAAGTGATTCCTGGGTTGATGACCCTATTACCCGACATATCATTGGACTTCATGTGAAGAAAGAAGAAGGGGATAGTATCTTTATGTGGCCACTAATATTGCACATAAAGAGTCATTATTCCATTCTTGTGTTGCCAATTGTTGAACCTAGGCACGTAAAAGAATATTCAAGTTTGTGTAGAAGATCTGATTGTGGAAGTGCCATTGGAGCAGAAAGTTCTTTATCTTCCCTCCTTCTCGATCTTCCTTCTATCACAGGGGCATTCATGGTTGCACTTGCTATTGGTGATGTAATCACTGGTGATGTGGTTGAACCTGATGTCCTCGTCAGTGCTTCTCCATCTGTGGGAGGGTTATTGGATTCATTAACAGGCAGCATAGGAATATCAGGAATATCTGCTAGGGCAAAACCTGTTGCTTCTCCCAGCATATCTGCCACTCCTTCTAGCAATACTGCAATAGGAGCTCTTAATTCAGATGTCCCAAGGCCTTTGGATAAAGATGCACTTAGATCTTTCTTAAGCAGTTCAATGCCCTTTGGAACACCCCTGGATCTAAGCTATTCCAATATATTTTCTATCAAAGCAAATGGTTTTTCTTCATCAGATCCACCTCCTGCTGATCTTAAACAACCAGCATGGAAGCCATATCTGTATAAAGGGAAGCAACGAGTGTTGCTTACAATACATGAGATCATTAACGCAGCTATGTATGACAGGGATGAAATTCCAGATAAAATATCAGTTTCTGGTCAAATAAATTGTCGAGCTGAATTAGAAGGGTTGCCTGATGTCTCATTCCCCCTTGCAGGGTTGAATAAGGCTCGTATTGAGGGCTTATCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTTCTCCCCCCCTTGGTAATTTTGTTTTAATGCGTTATCAGGCAATATGTGCTTCTGGACCTCCTGTTAAAGGATTTTACCAATTGTCCATGGTATCTGAGGATAAAGGTGCTTTTTTGTTCAAGTTGGGCTTGATGGAAGGTTATAAAGCTCCTCTGTCTATGGAATTTTGTACTGTGACTATGTCTTTCCCTAGAAGAAGGATTGTATCATTTGATGGAACTCCTTCAGTTGGAACAGTTTCAACTACCGAGCATTCAGTTGAATGGAAAATTTTAACGAGTGGACGAGGGCTTTTGGGAAAATGTATTGAGGCAACTTTTCCCGGGACAATTAGGTTTGCACCTTGGCAAATCCAAAGATTGCATTCTCCAAGTTCTTTATCTGCTAGTGTAGATGAGGTAGATAGTGATGTTGAGTCTGAAAGTGCAAGCAATGTGGTCAATATAGAGGAATTTTTAATGGAGAAAATGAGTAAGGATCTTCCTCCAGTTGAACTAGAGGAACCATTTTGCTGGCAGGCATACAATTATGCCAAGGTATCATTCAAGATTTTAGGGGCATCATTATCAGGATTATCTGTGGATCCTAAATCTGTCAGCATTTATCCAGCTGTTAAAGCTCCAGTCGAGTTTTCGACCCAGGTAACTTCGGGGGATTACATTTTGTGGAACACCTTGGATAAGTGCCCGTCTGTTGCCTCAGAAAAAATATAG 1878 41.91 MPDGCSIRAIWIFSNFDAVIFSRRFPVVEKRWRTACKTENDRCISDDLNSSVSPVLPNDSELAAAFVERKNREGSAGGFGIRIIQSSEGSDSWVDDPITRHIIGLHVKKEEGDSIFMWPLILHIKSHYSILVLPIVEPRHVKEYSSLCRRSDCGSAIGAESSLSSLLLDLPSITGAFMVALAIGDVITGDVVEPDVLVSASPSVGGLLDSLTGSIGISGISARAKPVASPSISATPSSNTAIGALNSDVPRPLDKDALRSFLSSSMPFGTPLDLSYSNIFSIKANGFSSSDPPPADLKQPAWKPYLYKGKQRVLLTIHEIINAAMYDRDEIPDKISVSGQINCRAELEGLPDVSFPLAGLNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAICASGPPVKGFYQLSMVSEDKGAFLFKLGLMEGYKAPLSMEFCTVTMSFPRRRIVSFDGTPSVGTVSTTEHSVEWKILTSGRGLLGKCIEATFPGTIRFAPWQIQRLHSPSSLSASVDEVDSDVESESASNVVNIEEFLMEKMSKDLPPVELEEPFCWQAYNYAKVSFKILGASLSGLSVDPKSVSIYPAVKAPVEFSTQVTSGDYILWNTLDKCPSVASEKI 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7283551 7289202 + CmaCh08G011840.1 Cma08g01184 299879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01184 625 CDD AP_MuD_MHD 300 618 - -
Cma08g01184 625 Gene3D Mu homology domain, subdomain B 301 429 - -
Cma08g01184 625 Pfam Adaptor complexes medium subunit family 301 594 IPR028565 -
Cma08g01184 625 ProSiteProfiles Mu homology domain (MHD) profile. 310 573 IPR028565 -
Cma08g01184 625 PANTHER AP-5 COMPLEX SUBUNIT MU-1 5 623 IPR039591 -
Cma08g01184 625 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 300 611 IPR036168 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01184 K19023 AP5M1, MUDENG; AP-5 complex subunit mu-1 - csv:101206253 1087.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01184 Cma17g00284 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01184 Cma-Chr8:7283551 Cma17g00284 Cma-Chr17:1497171 6.31E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g404 . . Bda03g01246 . . . . . Cmo08g01155 Cmo17g00272 . . . . . . . . . . . . . . Cla06g00530 Cam06g0571 . Cco06g0577 Clacu06g0559 Cmu06g0553 Cre06g1321 . . Cone7ag0198 Cone4ag0192 . . Chy11g01445 . . . . . . . . . . . . Cma08g01184 Cma17g00284 Car08g01061 Car17g00260 . Cpe17g00112 Bhi12g01779 . . . . . . . . . . . . . Lsi09g01373 . . Cme11g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007087 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01184 Cma_Chr08 FPKM 4.107172 4.421272 4.483243 4.889219 4.359081 4.797941 5.591417 6.292496 5.856388 7.257298