Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma08g01186 | ATGGGTTGTATCCACACAAAATGTTGCTGTCGGTACCCAAAATCATTGGTTGGAGAATCCCAGGACTTTCACCAAGGGGTTCCTTACTGTCTACAAGATAACAGCACTGTGATAGAAAGAGCATTGGAGCTTATTCCTGTGGCTTCCCACAACTATCATTTGGATTACTTGGTATTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAATCAAGACAGTTTCTGTATTAGGACAAATGTTCAAGGTAACCCGAATGCTCATTTTTTTGGTGTTTTTGATGGACATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAGGTTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCTGTTCAAGCTTATAATTCAGCGTTTTTATCCACTAATGATGAATTGCATTCAAGTGAAATAGATGATTCCATGAGTGGAACAACAGCAATTACAGTCCTTGTTGTTGGGGATACTCTTTATGTAGCCAATGTGGGTGATTCAAGAGCTGCAATTGCTGTTAAAGAAGGGAATTGTGTTCTTGCCAAAGATTTGTCAAATGATCAAACACCATTTAGAAAGGATGAATATGAGAGGGTTAAGCTTTGTGGAGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGTGATGAAGAAAGTCAGGGTGGCGATCCGCCTCGACTTTGGGTTCAAAATGGGCTGTATCCTGGGACTGCATTTACCAGGAGCATAGGTGATAGTACCGCCGAGCAGATCGGTGTAAATGCTGTTCCTGAGGTTTTAGTTCTTCAGCTCAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGCCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGTACCGCCATAGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGTACCGATGATATAACCATCATTATTATTCATATCAAAGGCTTGTCTAATAATGCAGGATTACGGGAGTGGTTGCCCGGGTTTCTTGAAAACATCCGGGTTGAAATTTGGCTTTCGCTGATGTACCGAACTCTCAACATGTCGTTGCAACGAATTGGAACCCGGCGATCGTAG | 1173 | 41.6 | MGCIHTKCCCRYPKSLVGESQDFHQGVPYCLQDNSTVIERALELIPVASHNYHLDYLVLAQRGYYPESPDKENQDSFCIRTNVQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHSSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAAIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEQIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIIHIKGLSNNAGLREWLPGFLENIRVEIWLSLMYRTLNMSLQRIGTRRS | 390 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7303681 | 7306760 | + | CmaCh08G011860.1 | Cma08g01186 | 299881 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma08g01186 | 390 | SUPERFAMILY | PP2C-like | 48 | 347 | IPR036457 | - | |
| Cma08g01186 | 390 | ProSitePatterns | PPM-type phosphatase domain signature. | 91 | 99 | IPR000222 | GO:0043169 | |
| Cma08g01186 | 390 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 40 | 352 | - | - | |
| Cma08g01186 | 390 | SMART | PP2C_4 | 47 | 343 | IPR001932 | - | |
| Cma08g01186 | 390 | CDD | PP2Cc | 71 | 328 | IPR001932 | - | |
| Cma08g01186 | 390 | ProSiteProfiles | PPM-type phosphatase domain profile. | 55 | 345 | IPR001932 | - | |
| Cma08g01186 | 390 | PANTHER | PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN | 40 | 352 | - | - | |
| Cma08g01186 | 390 | Pfam | Protein phosphatase 2C | 74 | 324 | IPR001932 | - | |
| Cma08g01186 | 390 | Gene3D | - | 50 | 347 | IPR036457 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma08g01186 | Cma14g01665 | CCT | |
| Cma08g01186 | Cma17g00286 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma08g01186 | Cma-Chr8:7303681 | Cma10g00654 | Cma-Chr10:2961143 | 1.21E-141 | dispersed | |
| Cma14g01665 | Cma-Chr14:12453529 | Cma08g01186 | Cma-Chr8:7303681 | 5.44E-171 | wgd | |
| Cma17g00286 | Cma-Chr17:1524974 | Cma08g01186 | Cma-Chr8:7303681 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma08g01186 | - | - | cmax:111494336 | 716.457 |