Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01196 ATGGCGCCCTGTACGCTAACTTTTCCTGCTTCTATCAGCCGAGTTGCAGTCGAAGAACATGAAGGTTTGAGTGCTGTTTCTTCTCGATTCTTATGGGGAATGGATCTAGACTTTCGATTTAAGAAGAGGGTCAATCAGGTCAAGAAGAGGCCCGGCGGGATCTGTGCATCGCTTTCAGAGACAGGGGAGTTTCCTTCACAAAGTCCACCAACTCCTCTTTTGGACACAATAAACTATCCAATTCATATGAAAAATCTATCCATTAAGGAGCTTTGTCAACTAGCTGATGAAGTAAGATCTGATGTCATCTTCAACGTGTCGAAAACTGGTGGTCACTTGGGTTCCAGTCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTATGTCTTCAATACCCCACAGGACAGGATTCTATGGGACGTTGGCCATCAGTCTTATCCGCACAAAATTCTAACTGGAAGGAGGGATAAGATGTCTACTATTAGACAGACAAACGGGTTGTCGGGATTCACAAAACGCTCGGAGAGCGAATACGATTGCTTCGGCACGGGTCACAGCTCTACCACCATCTCAGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTTAAGGGAAGAAAGAACAATGTGGTTGCAGTCATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCGGGGTACCTCGACTCGGACATGATTGTTATTCTTAACGACAACAAACAGGTCTCTTTACCAACTGCAACGCTCGATGGGCCCGTACCACCCGTGGGAGCTTTGAGCAGTGCTCTCAGCAGGCTGCAGTCAAACAGGCCACTCAGAGAACTGAGAGAGGTAGCCAAGGGTGTCACGAAACAAATTGGTGGTCCTATGCATGAATTGGCTGCAAAAGTTGATGAATATGCTCGTGGGATGATCAGTGGTTCTGGATCCACATTATTTGAGGAGCTCGGGCTCTATTATATCGGCCCTGTCGATGGTCATAACATGGATGATCTTGTTTCCATTCTCGAGGAAGTTAAGAGTACGAAAACTACAGGTCCAGTCCTCATCCATGTCATCACTGAGAAAGGACGAGGCTATCCATATGCCGAAAAAGCTGCTGACAAGTACCACGGAGTCACAAAGTTTGATCCTGCAACTGGAAAACAGCAGAAAACGAAGGCTGCAACGCAGTCGTATACGACATACTTCGCGGAGGCATTGATTGCAGAAGCGGAAGTGGATAACGATATTATTGCAATCCATGCTGCAATGGGAGGAGGCACAGGCTTAAATCTCTTCCAAAGACGTTTCCCGACGAGATGCTTTGACGTTGGTATAGCTGAACAGCATGCTGTTACATTTGCTGCTGGTCTAGCCTGTGAAGGCCTAAAACCATTCTGTGCGATCTACTCGTCGTTTATGCAAAGGGCATACGACCAGGTAGTTCATGATGTTGATTTGCAAAAGTTGCCTGTGAGATTTGCAATGGACAGGGCTGGCTTGGTTGGAGCAGATGGGCCAACCCATTGTGGTTCTTTTGATGTTACGTTCATGGCATGCCTGCCTAACATGGTGGTGATGGCCCCATCCGACAAGGTCGAGCTCTTTAACATGGTTGCTACAGCTGCAGCCATAGATGACCGACCGAGCTGTTTCCGGTATCCACGAGGTAATGGTATTGGTGTCGAGCTGCCACCAGGGAATAAAGGCATTCCCCTTGAGGTTGGAAAAGGCAGGATTTTACTTGAAGGTGAAAGAGTGGCACTCTTGGGCTACGGAACAGCAGTTCAAAACTGTTTGGCTGCTGCATCGATAGTCGAACGCCATGGACTACGAATAACAGTTGCCGATGGACGTTTCTGCAAGCCACTCGACCGAGCCCTTATCCGATCTCTGGCTAAATCGCACGAGATTTTGATCACAGTGGAAGAAGGATCGATCGGGGGGTTCGGGTCTCATGTCATCCAGTTCCTGGCTCTAGATGGCCTTCTTGATGGCAACTTGAAGTGGAGACCGCTGGTTCTTCCGGACCGATACGTCGAGCACGGTTCGCCAGCCGACCAACTGGCTGAAGCAGGTCTTACTCCATCTCACATTGCTGCTACAGTATTCAATATGCTGGGACAAATCAGGGAAGCTCTTGAAGTCATGTCATAG 2154 48.7 MAPCTLTFPASISRVAVEEHEGLSAVSSRFLWGMDLDFRFKKRVNQVKKRPGGICASLSETGEFPSQSPPTPLLDTINYPIHMKNLSIKELCQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNTPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNMDDLVSILEEVKSTKTTGPVLIHVITEKGRGYPYAEKAADKYHGVTKFDPATGKQQKTKAATQSYTTYFAEALIAEAEVDNDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDKVELFNMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILLEGERVALLGYGTAVQNCLAAASIVERHGLRITVADGRFCKPLDRALIRSLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGNLKWRPLVLPDRYVEHGSPADQLAEAGLTPSHIAATVFNMLGQIREALEVMS 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7343171 7347317 + CmaCh08G011960.1 Cma08g01196 299891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01196 717 Pfam Transketolase, C-terminal domain 575 698 IPR033248 -
Cma08g01196 717 Gene3D - 67 368 - -
Cma08g01196 717 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 76 706 IPR005477 GO:0008661|GO:0016114
Cma08g01196 717 Pfam Transketolase, pyrimidine binding domain 397 557 IPR005475 -
Cma08g01196 717 Gene3D - 395 565 - -
Cma08g01196 717 ProSitePatterns Transketolase signature 2. 502 518 IPR020826 -
Cma08g01196 717 PANTHER BNAA01G35430D PROTEIN 3 713 - -
Cma08g01196 717 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 359 IPR005477 GO:0008661|GO:0016114
Cma08g01196 717 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 3 713 IPR005477 GO:0008661|GO:0016114
Cma08g01196 717 ProSitePatterns Transketolase signature 1. 99 118 IPR005474 -
Cma08g01196 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 394 584 IPR029061 -
Cma08g01196 717 SMART Transket_pyr_3 396 561 IPR005475 -
Cma08g01196 717 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 707 IPR005477 GO:0008661|GO:0016114
Cma08g01196 717 CDD TPP_DXS 110 365 IPR005477 GO:0008661|GO:0016114
Cma08g01196 717 CDD TPP_PYR_DXS_TK_like 402 555 - -
Cma08g01196 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 458 IPR029061 -
Cma08g01196 717 SUPERFAMILY TK C-terminal domain-like 570 706 IPR009014 GO:0003824
Cma08g01196 717 Gene3D - 575 707 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01196 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101214927 1362.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01196 Cma17g00297 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01196 Cma-Chr8:7343171 Cma11g00414 Cma-Chr11:2030192 0 dispersed
Cma04g00864 Cma-Chr4:4432800 Cma08g01196 Cma-Chr8:7343171 1.41E-41 transposed
Cma16g00741 Cma-Chr16:3940748 Cma08g01196 Cma-Chr8:7343171 2.33E-08 transposed
Cma17g00297 Cma-Chr17:1588176 Cma08g01196 Cma-Chr8:7343171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01196 Cma_Chr08 FPKM 2.384765 2.398807 10.881441 11.628983 14.422945 13.468188 12.271332 4.097748 3.71531 3.351929