Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01199 ATGAGTTGCAACAAAGATGAAGCCGTTAGAGCAATGGAGATTGCTGAGAAGAAGATGGAAATCAAAGATTTCATCGGGGCTCGTAAGTTAGCTCTCCGGGCTCAACAGCTAAATCCTGATGGGGAGAACATTTCACAAATGCTTATGGTTTGTGATGTGCATTGTGCGGCAGAGAAGAAACTGTCTGGGAATGAGATGGATTGGTACGGTATTCTTCAGATCGAGCAAACGGCAAATGAGGCGACAATTAGGAAGCAGTACCGGAAGTATGCTCTTCTACTTCATCCCGACAAAAACAAATTTATGGGTGCTGAAGCTGCTTTCAAGTTGGTTGGTGAAGCTCAGAGAATTTTGTTGGACCAAGAGAAACGTCAATTGCATGATATGAGACGAAAACTGACAGTATCGCATCGAGCTCCACACAAAGCTGCTTCAACCTTTGATGTTGGGGTTCAAGCTAACTTCAGAAACAACTTTACAAGATTCATTCCTCAACATCAGCCCCCTCAACAGCATGGACACTCGGGGTTCGGTCATAATCATGCTACTTTTTGGACTGTCTGTCCATTTTGTTCAGTGAGGTATCACTACTATAAAGAAGTGGTTAATAGATCACTTTGCTGTCAGAATTGCAAGAATCCCTTTGTTGCATATGATATGGAACTTCAAGGATCTCACTCTCAACCCACGTATAACTTCAACCAGTCATCATTTTTCCAGAAGAAGAATTTCTTCAGTCACAGGGCGGAGACGGGACGCCCCAGAAACTCTCGGTCTGAGAAGTATAGAGCAGAATCTTTTCAGAGGACACGCAAAACTTCAGGTGGTGCTGTGGGAAAGTTCAATACTAAGAAAAAAAGGAAGCAGAGTTCCGAATCCAGTGACAGCTGTGATACTGGAAGTAGCTCCGAGTCTGAAGAGAACGTCATTACTGATGAAGTTAGCAGAAAGGATGTTGGACGCACTGGTGAGCATCGTCCACGAAGATCAAGTCGACACAAGCAAAAGATTTCTTACAGTGAGAATATAAGTGACGACGACGACGACTTTGAGATCACACCAAAAAAATCAAGCAGAAGAGTACCATCCGACACTTCGGATGACGACATTGAAGAAGTATATGTGGATGATAGGTCTGTTGATGTGGATAATGATCAGAGGGAAACAAATGAGCCAGAAAATAGTCGCACTGAAGGGAGTTCATCACGGAGAAGCACGAGAAGTAAGAAGGCGAGCGAAAAAGAAACAGCAGATAAGAATGTTCCTCAGAGAAGAATGAAGTCAGCTGGTGATCCCGAGCCTAAATTGCTCGAACGTCATGATCCTGATTTCAATGATTTTGATAAACTGCGTAATCGGGACTGTTTTTCTCCCGGGCAGATCTGGGCTATGTATCGTGATATTGATACCATGCCTCGATTTTATGCTCGGATCGATAGAGCATTTCCTTCAGAATTCAAGATTCAAGTCACTTGGCTAGAGCCAGAAGCAACTGATAAGAAAATGCCAATTTCCTGCGGTGATTTTGTATTTGGAGCAACTGAAACCATGACAGATTGTGGTTCGATGTTTTCTCATGCTGTTTCTTGGGACAAAGGCGGCCGTAAAGACAGTTTCAAGATTTTTCCAAGAAGAGGGGAAACTTGGGCTCTCTTCAAGAACTGGGATAAGAATAGTCAATGTGATTCCAATAGCAAAGCCGAATATGAGTTTGTCGAGACATTATCGGAATATACCGAAGAAGCTGGTATTGACGTTGCACTCTTAGCTAAAGTGAAGGGGTTTTCGAGTCTCTTTGGTCAAATGGTCGATCAAGAAGGAAAATCATTTCGAATCCCTGCAGATGAATTGTTCAGATTTTCGCACAGGATACCTTCGTTTCCACTCACAGGTGACGAACGAGAGGATGTTCCAAAAGGTTCTTTCGAACTCGATCCAGCTGCTCTTCCCCCCAATATTCCAGAGATCGCCATCCCCGAGCATTTGAAAGAGATGGCTGGCGATACTGGTCACGACACATTGAAGCCCACGAGGCGGCCTAAATGCAGGGAGGCTACTGCTGATGTTAAGAGTGATCTCTCATCTGAGAGCAATGATGATTGCGCACATGTAGCCTCGTCGGGTGAGGCTTACGAAATTCCAGATCCTGAATTTCACAACTTCGACGTCGACAAATCTTTTGACAAGTTTAAGATTAATCAAGTCTGGGCACTGTACAGCGACGAGGATGCTTTGCCTAGATATTATGGTCTGATCAGGAAGATAACCCGGGAACCGAAGTTCGAAGTGAAGTTGATGTGGCTCGAGCCCTCTGCACTGCCAAGTGACGCTATCGAATGGGACGACAAAGATATGCTGATTTCTTGTGGGAAATTTAGACCTCAGAGGAGGACTAGCATGCACTGCTGCAATTCCACTGGCTCCTTTTCACATCTGGTTAAAACTAATTCTTCTTCAAAGAATGAGATTTCCATCTCTCCTAGAAATGGTGAAGTTTGGGCATTGTATAAGAACTGGACTCCAGAATTCAGATGTTCAGATTTGGATAAACGTGTATATGATATAGCAGAAGTCATTGACGAGGACGATTTGCAAAAGGAAGTTATGGTCTTGGAACGTGTGGATGGTTATAACTCGGTCTTCAAGGCTCGAGCCAAAAACGATGGCTCAATGCTCACTATGGTAATCACCCAGGCCGAGCTTCTACGATTCTCCCATCAGATTCCTGCTTTTCGGTTGACAGATGAGCGGGGTGGTAGCTTGAGAGGTTGCTTGGAACTTGATCCCGCTGCTTTACCGCTAAACCGGCGCCGGCAAACTAAGCCGGCTTCGCTCCGTCGGCGATTTCTATTTGCTGCAGAAGAATTGAAAATGGCTCCATTTGGAGGCGATCGCGAGGACATTGATTGTACCGACACCGAAGTCTTTGATGGCCATCTTTCACCGCCCTCATGTTCTGGTGAGGAAACGGATAAGGCTTCATATTCCTCAGGAGCAGATCGTTTTTATGATGACGATTTTGAAACTCAAATAGTAAATTTTGCTGGAGAAACTCAAGTCGTGAATCCTCTAAATGATGAGTTTGAAACTCAATTAATGAATCCTTTAAATGATGAGTTTGAAACTCAATTAATGAGTCCTATAAATGATGAGTTTGAAACTCAGTTAGTGAATCCTCTTGGAGATACTCAAGTGTTCAATGTTGCGAGTGAAACTCAAACTTTGAGTGTCTGTGGTGAAACCCAGCAACTTGATGATCCTATTCCCGATGGCATCGAGTGTATGGACTTCGACACTCAAATATTGAATGATTTTGATGATGAAATGGCTGGTGGTTCCTATGAAGACGAAGGATCAAAGGGAACTGAAATTAACGTCAACGAAGATCTAACTGATGATGAATCAGCACAAAGTTTCTATCCATCCATGGAGAAGGATAAGGTTCAATTGAGCCCTCTTAGTGAACATGATGTGAGGAAGGATTTAAAGGCGGTACCGGACAAGTTGCCTGATAAAAAATGTAATTCAGGGCCTACACGACTTTCTTCAATACGTGCAGCTTCATTGCGTTCTTCTGGTTCAGCAGCCCGCAGTTCTGCCTTGCAGAATAGAAATCTTGGGTCATGTTCTGTTATGATTGACAAGGATATAGAAAAATCATCCGTAAAAGATAATCACATTGATCAACAGACTGATCTCGAGCAGTGCTGTGAGAATGCTGGAGAATTAGGTTACGTGAAGTGCAGAGCTGGCAGTTCAGCAGTGAGAAAACTTTTTACGAAAGACATTGTGGGGGATTTCGGAGATCTTCACTCAAGTCGTGATGTTGGCAACATGAACACACACGAGTTGACTGCATGCGATGGTGATCAGTTTGCAGGCTTAAGCTATGTTGATTCTCAAGAACCTGGGGATTTAATGCAAGATAATGCTCTTGATTTTGTCGATAAGTTTCTTAAAAACAATTCTTTGGAGTTTGATCAGGGAGGGGGTACCTGTAAATTGGATGCTATCGTGCAAACAAAGTCGGTTCTTAGCCCTAAAGGGCAATATAATCTGGCCAACATTGTTAACTGTATGAGAACAGTTGGAGAATCAAGAGTTTTTGATTGGGACGATAATCGGGAAGATGAAGGAGGTGGGGATATTTTCTGCAGAAGGAAGGAAGAGTTCTTCACTGAACCTCGAAAATCGAAAGGAAGAAGACCAGACTCGAACAGTGATAGGGGAGGATCTTTAAGTATCCCAAACATGAAATCAAGGTTATTTTGTTCTGATTCACGCCTAGAGTTGAGTAAAGGAAGCAAGAATAACGAGACAGCCCGAGAAGCCAAAGTCAAATGTAAAAAGAATCTATGCAATAAACTGGATCAGCAGAATGATGGTGATGCTTGTAGGGTAGAGTCGGAAGACGACGACATCGAGCCTAATCAGCAAGAAATCCCTGATGTAGGTTTCGATACTCAGATGGCAGCTGAGGCACTGGAAACATTATTCAATGATGAGAGCATCAATAAGCTAGTTAATAATGAAGCAAATCAACATTTGGAAAATAGTCCAAAGGATTCTTTTGGAGGCTCTCCTACTAGAAGGTCAAACACTAGCTCGAACACAAGGAAATCCTCGAAAAAGGGACGTGCTTCTAGTTCTGGGGTTGTCCCGAGGCAGTCCAAGAAAATAAACCGGAAGTTTTCTGGAAATTTCATGAAGGCGTGTGAAAATGAGACTGTAAAAATGTCAAGGAGGAATAATAAGACAGATGCTGATGGCATCATTGGTGATGGAAACACAGGCAGTGTGCCGAGCAATGTTGCTAAGGTTTCACCTGTTGCACGTCGAACTAGGCATTCAATGACAGTAAATCAATCGAAAAAGGCTAAAGTTGAATCTGGTGAATGTGAGCGGTCGGTTACAAAGGTTGGTCCATTAATCAAGAAAAGAAATCCTGATCGAGCCACTGGGGGCCCGAAGGCAAAGAGAACAAAATCTCGGGAGGCAGTTTCTAAGATACTTGTAACCAAGTCGAAAGAAGGCACTAAAAATGATGCAACAAGCTCCATGGGACAACGAAGATCGTGTGATATGTTAGCCGGTCAGGTAAGTCTGTCTGATGAGTTAGTTGGACAAACTGTAATTAGGCGCCCGAGGTCTTGTTCCACGAGGAAAACACGATCGTCATTATGTGTTATTTCATCTCTGGCTTCAAATGAGAACTTGGAAAGAGCAGGTGCAGAAAAATCTAATGATGGAAATATAACAGCTAAGGATGGATGTATGGTTTCTTCTGTTGTAAAGACTACGTCAGATGAATCTCCTAGTAAAAGACGTAAACCATCCGACACAGTTTGTTCTACTCCGCCTGATAATTGTAGGACGCCTATAAATGCCGTATCACCCGTTTGTATGGGTAACGAGTATTACAAACAATCATGCAAAAAGAGCCCCTTCAAACCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCCACGGGGCTTGTATCGGAACCCTTATCAACTGAATCGAGGAGGAGAAAAGATATGAACGATGTTCAAGTCTTGTATAGCCAGCACCTCGATGAGGACATAATCAAACAACAAAAGAAGACGTTGACTCGCCTAGGGATTAAAGTGGCATCGTCCATGACCGAAGCAACACATTTCATAGCCGATAAATTTATTCGTACAAGGAATATGTTAGAAGCCATTGCTCTGGGTAAGCTTGTGGTGACACACCAATGGATTCAGAGTTGTGGACAGGCAAGATGCTTCATCGACGAAAAAAATTACATCCTACGAGACGCCAAAAAGGAGAAGGAATTTGGATTTAGCATGCCAGGTTCGCTGGCGAGTGCTCGTCAGCATCCTCTTCTAGAGGGTCGACGAGTGTTGATTACTCCAAATACAAAACCCGGGAAAGATGTCATTTCGAGCTTGGTCAAGGCAGTGAAGGGCCAGGCAGTAGAGAGGCTGGGGAGGTCTATGCTGAAGGATGATCAAATTCCAGATGATTTGTTGGTTTTGTCATGTGAAGAAGATTATGATATGTGTATGCCTTTTCTTGAAAAAGTGTATGGTTCCGAGCTTCTGCTTAACGGGATCGTAACTCAAAAGTTCGAGTTTGAAAGGTATCGTCTTTTCGTAGATCAAGTCAAGAGAACTCGGTCGACAATATGGCTCAAGAAAGATGGCAATAAGTTCCATCGTGTTTCTAAACATCATTAA 6222 43.17 MSCNKDEAVRAMEIAEKKMEIKDFIGARKLALRAQQLNPDGENISQMLMVCDVHCAAEKKLSGNEMDWYGILQIEQTANEATIRKQYRKYALLLHPDKNKFMGAEAAFKLVGEAQRILLDQEKRQLHDMRRKLTVSHRAPHKAASTFDVGVQANFRNNFTRFIPQHQPPQQHGHSGFGHNHATFWTVCPFCSVRYHYYKEVVNRSLCCQNCKNPFVAYDMELQGSHSQPTYNFNQSSFFQKKNFFSHRAETGRPRNSRSEKYRAESFQRTRKTSGGAVGKFNTKKKRKQSSESSDSCDTGSSSESEENVITDEVSRKDVGRTGEHRPRRSSRHKQKISYSENISDDDDDFEITPKKSSRRVPSDTSDDDIEEVYVDDRSVDVDNDQRETNEPENSRTEGSSSRRSTRSKKASEKETADKNVPQRRMKSAGDPEPKLLERHDPDFNDFDKLRNRDCFSPGQIWAMYRDIDTMPRFYARIDRAFPSEFKIQVTWLEPEATDKKMPISCGDFVFGATETMTDCGSMFSHAVSWDKGGRKDSFKIFPRRGETWALFKNWDKNSQCDSNSKAEYEFVETLSEYTEEAGIDVALLAKVKGFSSLFGQMVDQEGKSFRIPADELFRFSHRIPSFPLTGDEREDVPKGSFELDPAALPPNIPEIAIPEHLKEMAGDTGHDTLKPTRRPKCREATADVKSDLSSESNDDCAHVASSGEAYEIPDPEFHNFDVDKSFDKFKINQVWALYSDEDALPRYYGLIRKITREPKFEVKLMWLEPSALPSDAIEWDDKDMLISCGKFRPQRRTSMHCCNSTGSFSHLVKTNSSSKNEISISPRNGEVWALYKNWTPEFRCSDLDKRVYDIAEVIDEDDLQKEVMVLERVDGYNSVFKARAKNDGSMLTMVITQAELLRFSHQIPAFRLTDERGGSLRGCLELDPAALPLNRRRQTKPASLRRRFLFAAEELKMAPFGGDREDIDCTDTEVFDGHLSPPSCSGEETDKASYSSGADRFYDDDFETQIVNFAGETQVVNPLNDEFETQLMNPLNDEFETQLMSPINDEFETQLVNPLGDTQVFNVASETQTLSVCGETQQLDDPIPDGIECMDFDTQILNDFDDEMAGGSYEDEGSKGTEINVNEDLTDDESAQSFYPSMEKDKVQLSPLSEHDVRKDLKAVPDKLPDKKCNSGPTRLSSIRAASLRSSGSAARSSALQNRNLGSCSVMIDKDIEKSSVKDNHIDQQTDLEQCCENAGELGYVKCRAGSSAVRKLFTKDIVGDFGDLHSSRDVGNMNTHELTACDGDQFAGLSYVDSQEPGDLMQDNALDFVDKFLKNNSLEFDQGGGTCKLDAIVQTKSVLSPKGQYNLANIVNCMRTVGESRVFDWDDNREDEGGGDIFCRRKEEFFTEPRKSKGRRPDSNSDRGGSLSIPNMKSRLFCSDSRLELSKGSKNNETAREAKVKCKKNLCNKLDQQNDGDACRVESEDDDIEPNQQEIPDVGFDTQMAAEALETLFNDESINKLVNNEANQHLENSPKDSFGGSPTRRSNTSSNTRKSSKKGRASSSGVVPRQSKKINRKFSGNFMKACENETVKMSRRNNKTDADGIIGDGNTGSVPSNVAKVSPVARRTRHSMTVNQSKKAKVESGECERSVTKVGPLIKKRNPDRATGGPKAKRTKSREAVSKILVTKSKEGTKNDATSSMGQRRSCDMLAGQVSLSDELVGQTVIRRPRSCSTRKTRSSLCVISSLASNENLERAGAEKSNDGNITAKDGCMVSSVVKTTSDESPSKRRKPSDTVCSTPPDNCRTPINAVSPVCMGNEYYKQSCKKSPFKPSLLKELRDLTATGLVSEPLSTESRRRKDMNDVQVLYSQHLDEDIIKQQKKTLTRLGIKVASSMTEATHFIADKFIRTRNMLEAIALGKLVVTHQWIQSCGQARCFIDEKNYILRDAKKEKEFGFSMPGSLASARQHPLLEGRRVLITPNTKPGKDVISSLVKAVKGQAVERLGRSMLKDDQIPDDLLVLSCEEDYDMCMPFLEKVYGSELLLNGIVTQKFEFERYRLFVDQVKRTRSTIWLKKDGNKFHRVSKHH 2073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7360260 7369988 - CmaCh08G011990.1 Cma08g01199 299894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01199 2073 SUPERFAMILY Chaperone J-domain 64 159 IPR036869 -
Cma08g01199 2073 CDD BRCT_MDC1_rpt1 1861 1924 - -
Cma08g01199 2073 SMART BRCT_7 1844 1921 IPR001357 -
Cma08g01199 2073 SMART dnaj_3 66 123 IPR001623 -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1107 1131 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1645 1664 - -
Cma08g01199 2073 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cma08g01199 2073 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cma08g01199 2073 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cma08g01199 2073 CDD BRCT_PAXIP1_rpt6_like 1956 2039 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 247 268 - -
Cma08g01199 2073 SUPERFAMILY BRCT domain 1840 1947 IPR036420 -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1394 1418 - -
Cma08g01199 2073 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 1841 1931 IPR001357 -
Cma08g01199 2073 Gene3D BRCT domain 1953 2053 IPR036420 -
Cma08g01199 2073 Gene3D BRCT domain 1839 1952 IPR036420 -
Cma08g01199 2073 ProSiteProfiles BRCT domain profile. 1842 1931 IPR001357 -
Cma08g01199 2073 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 294 308 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1764 1787 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1459 1480 - -
Cma08g01199 2073 Pfam Domain of unknown function (DUF3444) 437 633 IPR024593 -
Cma08g01199 2073 Pfam Domain of unknown function (DUF3444) 710 916 IPR024593 -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 309 325 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 334 367 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 247 441 - -
Cma08g01199 2073 CDD DnaJ 67 120 IPR001623 -
Cma08g01199 2073 Pfam DnaJ domain 67 128 IPR001623 -
Cma08g01199 2073 PANTHER - 1 935 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1586 1637 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 377 441 - -
Cma08g01199 2073 MobiDBLite consensus disorder prediction 1512 1562 - -
Cma08g01199 2073 Gene3D DnaJ domain 64 174 IPR036869 -
Cma08g01199 2073 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 935 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01199 - - K20780 csv:101217520 1394.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01199 Cma17g00302 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01199 Cma-Chr8:7360260 Cma14g01435 Cma-Chr14:10999039 8.05E-38 dispersed
Cma17g00302 Cma-Chr17:1615159 Cma08g01199 Cma-Chr8:7360260 0 wgd
Cma17g01136 Cma-Chr17:7906696 Cma08g01199 Cma-Chr8:7360260 9.75E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01199 Cma_Chr08 FPKM 4.081131 4.65519 4.065967 4.456264 5.932642 5.738491 5.811073 2.644816 2.222705 2.182552