Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01200 ATGTTCTCCATTGCCGGATCTTCCGTCTCCATGCCTTCTCTCTCCACCTCTCTGAAGCACAGCCAGGTGTCTAGCGGCAGGATCTCAGGTTTGAAATTAGTTTCAGCGCCTTCAAGCAGGGCGAGTTTTCCCTTGAGAAGGAGTTACAGGCAGAGAAGCCTTCAAGTTTGCTGTGCTGCTAAGCCAGAGACCGTAGAGAAGGTGGCTGGAATCGTGAGGAAACAGCTTGCGCTTTCTGAAGATTCTAAGGTCAATGGCGAATCAAAGTTTTCTGAGCTTGGAGCTGATTCTCTCGACACGGTTGAGATTGTGATGGGACTGGAAGAGGAATTTGACATCAGCGTGGAAGAAGAGAGCGCCCAAAGCATTACCACCGTCCAAGAGGCTGCGGATCTCATCGAGACTCTCATTTCCAAGCCTAAATAA 426 49.77 MFSIAGSSVSMPSLSTSLKHSQVSSGRISGLKLVSAPSSRASFPLRRSYRQRSLQVCCAAKPETVEKVAGIVRKQLALSEDSKVNGESKFSELGADSLDTVEIVMGLEEEFDISVEEESAQSITTVQEAADLIETLISKPK 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7380111 7383930 - CmaCh08G012000.1 Cma08g01200 299895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01200 141 PANTHER ACYL CARRIER PROTEIN 2, CHLOROPLASTIC-RELATED 4 139 - -
Cma08g01200 141 SMART Phosphopantetheine attachment site 65 137 IPR020806 GO:0031177
Cma08g01200 141 Hamap Acyl carrier protein [acpP]. 63 137 IPR003231 GO:0006633
Cma08g01200 141 SUPERFAMILY ACP-like 62 137 IPR036736 -
Cma08g01200 141 ProSiteProfiles Carrier protein (CP) domain profile. 62 137 IPR009081 -
Cma08g01200 141 PANTHER ACYL CARRIER PROTEIN 4 139 IPR044813 GO:0000036|GO:0006633
Cma08g01200 141 Pfam Phosphopantetheine attachment site 67 133 IPR009081 -
Cma08g01200 141 Gene3D - 60 139 IPR036736 -
Cma08g01200 141 TIGRFAM acyl_carrier: acyl carrier protein 63 135 IPR003231 GO:0006633
Cma08g01200 141 ProSitePatterns Phosphopantetheine attachment site. 92 107 IPR006162 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01200 - - - csv:101217997 214.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01200 Cma17g00305 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01171 Cma-Chr5:9087431 Cma08g01200 Cma-Chr8:7380111 9.54E-47 dispersed
Cma08g00817 Cma-Chr8:4958513 Cma08g01200 Cma-Chr8:7380111 2.77E-24 dispersed
Cma08g01200 Cma-Chr8:7380111 Cma12g01095 Cma-Chr12:8657740 1.51E-48 dispersed
Cma17g00305 Cma-Chr17:1635855 Cma08g01200 Cma-Chr8:7380111 4.04E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g369 . . . . . Bpe14g01151 . . . Cmo17g00295 . . . . . . . . . . . . . . Cla06g00507 Cam06g0547 Cec06g0547 Cco06g0555 Clacu06g0533 Cmu06g0532 Cre06g1301 Cone14ag0788 Cone15ag0789 Cone7ag0182 Cone4ag0177 . . Chy11g01467 . Blo02g00577 Blo07g00190 Bda11g00543 . . Bpe13g00646 . Bma06g01520 . . . Cma08g01200 Cma17g00305 Car08g01078 Car17g00281 Cpe12g00257 Cpe17g00097 Bhi12g01745 . . . . . . . . . . . . . Lsi09g01393 . . Cme11g01973
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008190 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01200 Cma_Chr08 FPKM 142.179688 157.732895 178.684235 181.241684 315.174377 258.620941 303.431305 262.921875 290.820374 291.444519