Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01201 ATGGCGTCTGAAATGATTGTCGAATCAGGCTCGTCGATAATAGATTTTGGGATGGAGTTAGTCGCGGATCATACTTCGGTGGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGTGGTTGCATTGTTGTTGGTCATTTGTTAGAGGAAAACCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGGTTGTGTACCGGCATCATCATATTGCTAACAACTAGAGGGAAAAGTTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATCTATCTCCTTCCGCCTATCATTTTCAATGCCGGTTTCCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCCTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCTCTTGATCTTGGAGATTATCTTGCTATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGTACCTTACAGGTTCTTAATCAGGATGAGACCCCTCTCCTGTATAGCCTGGTTTTTGGGGAGGGTGTTGTAAATGATGCCACTTCTGTTGTGCTATTCAATGCAATCCAGAACTTTGATCTGTCTCACATGAATTCAAGCATCATTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACCGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTACTTTTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTAACTGAAAGTTCCAGAGTTACTACAAAGCATGCTTTCGCCACTCTTTCTTTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCGGGGAAATCAATTGGGGTGAGCTCAATACTGTTGGGACTGGTTCTGGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCCGTTTCAATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGCACAGTGTTTTTTGGAATGATGACAAAACCACTGATAGGGATTTTGCTACCCCAACCAAAATACACAATGAGCATGCTGTCTTCGGAACCCTCATCCCCAAAATCCTTCACAGTCCCACTCCTCACCAACGACGACCCAAACAGCCATTCCCATTCCCCTCTGGGGCTGTTCCTCCGAATCCCGGCCCATACGGTTCACCATTATTGGCGGAGATTCGACGACGCCTTCATGCGCCCTGTTTTTGGAGGGAGGGGCTTTGTGCCCTTCGTCCCTGGCTCCCCTACCGAAGACCCCAACCAACAATGGCAAACTGAAGGACCACTTGAAGCCGCTAAATAA 1641 43.69 MASEMIVESGSSIIDFGMELVADHTSVVSLNLFVALLCGCIVVGHLLEENRWINESITALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIILQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVFFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLTNDDPNSHSHSPLGLFLRIPAHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPNQQWQTEGPLEAAK 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7385483 7391030 - CmaCh08G012010.1 Cma08g01201 299896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01201 546 MobiDBLite consensus disorder prediction 526 546 - -
Cma08g01201 546 Gene3D - 150 201 - -
Cma08g01201 546 PANTHER SODIUM/HYDROGEN EXCHANGER 3 17 537 - -
Cma08g01201 546 Pfam Sodium/hydrogen exchanger family 32 445 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma08g01201 546 PANTHER SODIUM/HYDROGEN EXCHANGER 17 537 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cma08g01201 546 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma08g01201 546 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma08g01201 546 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma08g01201 546 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01201 Cma-Chr8:7385483 Cma18g00624 Cma-Chr18:5526159 9.44E-44 dispersed
Cma01g01101 Cma-Chr1:8073976 Cma08g01201 Cma-Chr8:7385483 0 transposed
Cma10g01092 Cma-Chr10:7256436 Cma08g01201 Cma-Chr8:7385483 0 transposed
Cma11g01251 Cma-Chr11:8327881 Cma08g01201 Cma-Chr8:7385483 0 transposed
Cma17g01131 Cma-Chr17:7885629 Cma08g01201 Cma-Chr8:7385483 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01201 - - cmos:111436756 1015.37