Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01203 ATGTCTCTCAAGAGCATCATTCAAGATATGAGGTCCCGCTCCCGCTGTGTGGTGCAGGACGGCACGGCGCCGGAGCCAACGGACGGCCTCGTCCAGAGCTGCTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTAATGAGAATCGAGGCATCGGAGACTTCTTGGCCACGGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTATGCCGGAGCTGGCGGGCCATCACTAAAGAGATCGTCAAAACGCCGGAGGTTTCCGGCAAGTTAACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTATTCCTCAGTTTGACTAATGCACTAAATGATGATGGTAAGTTTCTTCTTGCTGCTCGGAAATGCAAGCGACCGACCTACACAGACTATATTATCTCTTTACACGCTGAGGATTTGTCGAAAGGGAGCAGCACCTATGTCGGGAAGTTGAGATCTAATTTCCTAGGAACTAAGTTCACAATCTTTGACGGGCAACCCCCACATTCGGGAGCGAAGATCACAAAAAGTCGCTCCACGAGGCTTGTGAATTTGAAACAAGTTTCTCCCAAATTCCCTGCTGGGAACTATCCAGTTGCTCACATTTCGTATGAACTAAATGTATTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTGGCTCCGACACCGACCGAGCTCTCGTTGAGCAATGTGGAACTGTTTCCATCGTTCCCGTTCCTAAGGTCGAAATCAAATGCAGATAGCTTGCTTTCTGAACCATTAGCTAGTCAGAAAGATGAAATGCTGGTGCTGAGAAACAAGACTCCCAGGTGGCACGAGCAGCTTCAATGCTGGTGTTTGAATTTTCATGGACGAGTTACAATTGCTTCCGTGAAAAATTTTCAACTCGTCGCTTCTTCGGAAACCGAACCTCCTTCACAAGAACAAGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACCATGGATTTTCGTTACCCGATCTCGACTTTCCAGGCTTTTGCTATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1161 48.49 MSLKSIIQDMRSRSRCVVQDGTAPEPTDGLVQSCWANMPQELLREVLMRIEASETSWPRRKSVVACAGVCRSWRAITKEIVKTPEVSGKLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKFPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLASQKDEMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSETEPPSQEQEKIILQFGKVGKDLFTMDFRYPISTFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7397977 7399911 + CmaCh08G012030.1 Cma08g01203 299898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01203 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Cma08g01203 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Cma08g01203 386 Pfam Tub family 97 381 IPR000007 -
Cma08g01203 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Cma08g01203 386 PANTHER TUBBY-RELATED 1 386 - -
Cma08g01203 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cma08g01203 386 SUPERFAMILY F-box domain 33 78 IPR036047 GO:0005515
Cma08g01203 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Cma08g01203 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Cma08g01203 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cma08g01203 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cma08g01203 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cma08g01203 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cma08g01203 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Cma08g01203 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cma08g01203 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01203 Cma14g01645 CCT
Cma06g01463 Cma08g01203 CCT
Cma08g01203 Cma14g01645 ECH
Cma06g01463 Cma08g01203 ECH
Cma08g01203 Cma17g00306 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00575 Cma-Chr4:2925521 Cma08g01203 Cma-Chr8:7397977 6.67E-134 dispersed
Cma08g01203 Cma-Chr8:7397977 Cma16g00616 Cma-Chr16:3186287 1.07E-157 dispersed
Cma16g00440 Cma-Chr16:2194491 Cma08g01203 Cma-Chr8:7397977 1.17E-132 dispersed
Cma14g01645 Cma-Chr14:12300711 Cma08g01203 Cma-Chr8:7397977 0 wgd
Cma17g00306 Cma-Chr17:1640574 Cma08g01203 Cma-Chr8:7397977 0 wgd
Cma06g01463 Cma-Chr6:9347211 Cma08g01203 Cma-Chr8:7397977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35562 PF01167 Tub 1.50E-110 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01203 K19600 - csv:101203437 721.85