Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01207 ATGGCTGCTGCATTGGAATTCTTCATCGTTGATGCTGCCGGCGATGACGGAATGAACGGCGGTGCTGAGTTCCTGGCTCGAGAATTAGAAGTCGGTTCACTTCTCTTTCAGAGTCTATTTTCGAAACCCACCCCCGGCGTCCGAGAAAAAGTTATGGCGAAACCCTCGAAACGACAGGTGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAGGAGGACGAGGAGGAGCTCGAAGCGGTAGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGAGGATTCAGATAACGATGCATCACCTGTCGAAAATGGCGAGGAAGAGGACGGAAGTAACGACGGCGATGATGATAAAGTCGATATTAGCAGGCGTGAAAAGGCCAGACTAAAAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTGGATGCACAAAATGCTGCAATTGATGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCTCAAAAGAAAACGAAGGGAAGGGGTCGTCATGCATCAAAGATAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTTTATCTGGGACTGGGAACACTCGTCTCCTTACACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGGTTAAATTGGCTCATTCGACTGTATGAGAATGGCATCAATGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACACTACAAACCATCTCTCTGTTGGGCTATCTTCACGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCAAAATCTACTCTTGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCTATCTTGCGAGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGAATATACGGGAAAATTTACTGGTAGCTGGGAAGTTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATCAAGGAGAAGTCTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTCTAATCACTGGCACGCCACTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTTCTTTTGCCTGAAATATTTAGTTCAGCTGAAACTTTCGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTTGTTCAACAACTTCACAAGGTCCTTCGACCTTTTCTTCTTCGGAGGCTGAAATCGGATGTTGAAAAAGGTTTACCACCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCACAGATGCAAAAGCAATACTATCGTGCTTTGCTCCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGACTTCTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACTGGAGATCATCTTATTACAAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGACTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTACTACTGTCGTATTGATGGTAACACTGGTGGTGAGGATCGTGATGCATCCATTGATGCCTTCAACAAGCCAGGAAGTGAAAAATTTGTTTTCTTACTTTCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTCATTCTTTACGACAGTGACTGGAATCCTCAAGTTGATCTGCAAGCCCAAGATCGTGCTCACAGAATTGGTCAGAAGAAGGAGGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTTATTGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGATAGAATCATTGCAAAAGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAGATGGATGAAAGTGGGGAGCTTCCTGACATGAACTCTGCTGAATTGTATGATTTTGACGATGAGAAGGATGAAAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCGCCTAAAAGGGAGCGGAAGCGCAATTACTCAGAATCGGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAGGAGCCCAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAACTATATGAAAAAGAAGTGCGGTATCTCATGCTAACACATCAAAAGAATCAGTTGAAAGATACAATAGATGTTGAGGAGACTGAAGATGTGGGTGATCCATTGACGGCCGAAGAGCTGGAAGAAAAAGAAAGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAGTATGGGCGAAATGATATTAAAAGTATTGCTTTGGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAGTGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCCAGGATTTCTCGCAAGGATGAAATAATGAAAGCCATCGGCAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTACAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGCTACGGGAACTGGGACGAACTGAAAGCAGCATTTCGTACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACAACACAAGAACTTGCAAGGAGGTGTGATACCTTAATCCGGTTAGTCGAGAAGGAAAACCAGGAATATGATGAGCGGGAAAGACAGGCCCGTAAAGAAAAGAAGCTTGCGAAGAGTATGACGCCATCAAAACGTGCCTTGGCTAGGCAGTCCGAGAGCCCAACTAACCTAAAGAAGCGTAAGCAATTATCGAAGGATGATTATGTGAACTCCGGTAAGAGGAGGAAGTGA 3399 42.69 MAAALEFFIVDAAGDDGMNGGAEFLARELEVGSLLFQSLFSKPTPGVREKVMAKPSKRQVSSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEEDGSNDGDDDKVDISRREKARLKEMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKITEEEEDEEYLKEEEDGLSGTGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRNIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDESGELPDMNSAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMLTHQKNQLKDTIDVEETEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIALEMEGKTEEEVERYASVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQSESPTNLKKRKQLSKDDYVNSGKRRK 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7412859 7421827 + CmaCh08G012070.1 Cma08g01207 299902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01207 1132 Pfam SNF2-related domain 262 529 IPR000330 GO:0005524|GO:0140658
Cma08g01207 1132 MobiDBLite consensus disorder prediction 816 837 - -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 1079 1096 - -
Cma08g01207 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 745 IPR027417 -
Cma08g01207 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 464 IPR027417 -
Cma08g01207 1132 Gene3D - 250 465 IPR038718 -
Cma08g01207 1132 PANTHER SNF2/RAD54 HELICASE FAMILY 59 1132 - -
Cma08g01207 1132 SUPERFAMILY Homeodomain-like 963 1085 IPR009057 -
Cma08g01207 1132 Pfam HAND 821 904 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cma08g01207 1132 Pfam Helicase conserved C-terminal domain 552 664 IPR001650 -
Cma08g01207 1132 Gene3D ISWI, HAND domain 809 907 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cma08g01207 1132 SMART ultradead3 245 437 IPR014001 -
Cma08g01207 1132 Gene3D - 470 762 IPR027417 -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 1079 1132 - -
Cma08g01207 1132 SUPERFAMILY Homeodomain-like 911 961 IPR009057 -
Cma08g01207 1132 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 426 IPR014001 -
Cma08g01207 1132 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 59 1132 - -
Cma08g01207 1132 Coils Coil 73 93 - -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 192 237 - -
Cma08g01207 1132 CDD SF2_C_SNF 550 675 - -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 78 93 - -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 104 130 - -
Cma08g01207 1132 Coils Coil 1065 1092 - -
Cma08g01207 1132 Gene3D iswi atpase 963 995 - -
Cma08g01207 1132 CDD DEXHc_SMARCA1_SMARCA5 246 466 IPR044754 GO:0005524
Cma08g01207 1132 Gene3D - 996 1099 - -
Cma08g01207 1132 Gene3D - 908 962 - -
Cma08g01207 1132 ProSiteProfiles SANT domain profile. 907 959 IPR017884 -
Cma08g01207 1132 Coils Coil 144 164 - -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 60 77 - -
Cma08g01207 1132 CDD SANT 911 951 IPR001005 -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 1110 1132 - -
Cma08g01207 1132 SMART helicmild6 580 664 IPR001650 -
Cma08g01207 1132 SMART sant 908 957 IPR001005 -
Cma08g01207 1132 SMART sant 1010 1071 IPR001005 -
Cma08g01207 1132 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 554 705 IPR001650 -
Cma08g01207 1132 MobiDBLite consensus disorder prediction 40 134 - -
Cma08g01207 1132 Pfam SLIDE 965 1075 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cma08g01207 1132 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 820 910 IPR036306 GO:0003677|GO:0006338|GO:0031491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01207 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1973.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01737 Cma-Chr2:9751162 Cma08g01207 Cma-Chr8:7412859 1.04E-77 dispersed
Cma04g00779 Cma-Chr4:3971220 Cma08g01207 Cma-Chr8:7412859 1.64E-60 dispersed
Cma06g00094 Cma-Chr6:520057 Cma08g01207 Cma-Chr8:7412859 1.30E-39 dispersed
Cma08g00147 Cma-Chr8:802517 Cma08g01207 Cma-Chr8:7412859 5.25E-115 dispersed
Cma08g01207 Cma-Chr8:7412859 Cma20g00102 Cma-Chr20:447173 1.66E-146 dispersed
Cma19g00099 Cma-Chr19:602390 Cma08g01207 Cma-Chr8:7412859 9.25E-79 dispersed
Cma08g01207 Cma-Chr8:7412859 Cma17g00255 Cma-Chr17:1309258 4.42E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35563 PF00176 SNF2_N 1.00E-71 CL0023 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01207 Cma_Chr08 FPKM 29.256546 32.325378 35.127701 35.348064 57.000381 55.68026 58.992085 62.95216 57.940178 59.743061