Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01215 ATGTCTAATTTTCTCTGCAAAACCCTACTTCAGGTTCGGCATCTTACCACGATTTCGCCATATCCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCTCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTCATATCTCGTTCATTATCGGGAAATACCCTCGGATTCTTCTATCAAATCCGAATGGAGCTCTTTTGCCTAGGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAAGTCACGAAGATTATTTCCAAGGCTCCGAAAATCTTGATGAGAAGCGTTGATGAACATCTGGTTCCTGCTTTTGATCTTTTGAAAGGTTATCTTGGATCTAATGAGCGAACTATCGCATCAATCAAACGCTTTCCGAGTATCATTGCGGATATTCGCCAAAAACATTTGAGCGGATCTGTTAGAATGTTGCTCGACGCCGGCGTGCCTGAGGCGCATGTTATGTATTTTCTTTTTTACCAGCCGAGAATGTTCACTATGGCTCTAGACAGGTTTAGGGAGATTTTGGAAGATGTGAAGAAAATGGGGTTTGATCCATCGAAATCTAGCTTTATTCAAGCTGTTCATGCTATACGAGGAATGAGCAAATCGACATGGGTACGGAAGCTTGGTATTTACAAGAGGTGGGGTTTATCTGAAGAAGAGATTCTTGCTGCATTTAGGAGCCATCCATGGTGTATGACATTATCAGAGGAAAAAATTATGTTGGCAATGGATTTCTTTGTCAAGAAATTAGGCTGGGAAACTGCAGCGATTGTCAGGAGTCCTGTGCTGCTTTCATTTAGCTTAAAAAAGAGAACAATTCCAAGAGCTTCAGTTCTTCTGTTTCTGTTTCAGAAAGGTTTGACTACGAAAAAAACCATGTTGGTAAAACCATATATGTACACTGAAACTCAGTTCTTGCAGAAGTTTGTTCGTCCTCATCTGAAAGAGGCTCCTCAGCTATCGAAGCTGTATCGTATAAATGTGGATGGTGGGATTAATCGATTATGA 1152 41.32 MSNFLCKTLLQVRHLTTISPYPKLRCVQSLHFNYSTVSSDSHSFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIAHISFIIGKYPRILLSNPNGALLPRLEFLYTRGASSSEVTKIISKAPKILMRSVDEHLVPAFDLLKGYLGSNERTIASIKRFPSIIADIRQKHLSGSVRMLLDAGVPEAHVMYFLFYQPRMFTMALDRFREILEDVKKMGFDPSKSSFIQAVHAIRGMSKSTWVRKLGIYKRWGLSEEEILAAFRSHPWCMTLSEEKIMLAMDFFVKKLGWETAAIVRSPVLLSFSLKKRTIPRASVLLFLFQKGLTTKKTMLVKPYMYTETQFLQKFVRPHLKEAPQLSKLYRINVDGGINRL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7447937 7449088 + CmaCh08G012150.1 Cma08g01215 299910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01215 383 Pfam mTERF 179 341 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 Pfam mTERF 79 269 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 Gene3D Transcription termination factor 3, mitochondrial 160 370 IPR038538 -
Cma08g01215 383 SMART mt_12 165 196 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 SMART mt_12 129 161 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Cma08g01215 383 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 24 376 - -
Cma08g01215 383 PANTHER CGI-12 PROTEIN-RELATED 24 376 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01215 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - qsu:111987836 334.724
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01484 Cma08g01215 CCT
Cma08g01215 Cma14g01633 CCT
Cma08g01215 Cma14g01633 ECH
Cma06g01484 Cma08g01215 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01215 Cma-Chr8:7447937 Cma13g00338 Cma-Chr13:3906122 1.15E-83 dispersed
Cma14g01633 Cma-Chr14:12221174 Cma08g01215 Cma-Chr8:7447937 4.25E-97 wgd
Cma17g01117 Cma-Chr17:7825207 Cma08g01215 Cma-Chr8:7447937 1.75E-86 wgd
Cma06g01484 Cma-Chr6:9442857 Cma08g01215 Cma-Chr8:7447937 6.56E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g337 . . . Bda08g00283 . Bpe14g01137 . Bma05g01055 Cmo08g01188 . Cma06g01484 Cma14g01633 . . . . . . . . . . . . Cla06g00494 Cam06g0531 Cec06g0531 Cco06g0535 Clacu06g0515 Cmu06g0517 Cre06g1288 Cone11ag0062 Cone18ag1417 . . Lsi05g01523 . . Cme06g00711 Blo02g00516 Blo07g00180 Bda11g00534 Bda13g00173 Bpe05g00845 Bpe13g00655 . Bma06g01511 Sed02g1207 . Cmo14g01671 Cma08g01215 . Car08g01086 . . . Bhi12g02086 Tan06g0862 Cmetu06g1898 . . . Lcy13g0191 Cla05g00633 Cam05g0694 Cec05g0705 Cco05g0701 Clacu05g0689 Cmu05g0656 Cre05g0727 Lsi09g01413 Csa03g01436 Chy06g00675 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000251 8 3 2 6 4 3 3 5 5 12 2 3 4 4 8 6 2 8 2 4 10 4 4 7 4 5 2 16 4 6 156
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35564 PF02536 mTERF 3.30E-25 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01215 Cma_Chr08 FPKM 5.219618 4.747297 8.210758 8.501944 9.245929 9.279938 10.14978 8.696101 10.148383 12.145299