Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01216 ATGTTTGCTTCCAGTATGGATACTGTGAGGGACACAACTAGAACTGCGGGAACAATGTTAATCCCAATGCGTTTTGTCTGGCCGTATGGCGGAAGAAGTGTATTTCTCAGTGGCTCTTTCACCAGGTGGTCGGAGCTTGTTCCTATGACGCCTATGGAGGGCTGTCCTACTGTTTTTCAGGCTATTTACAGCTTAACCCCTGGATATCACCAGTATAAATTTTTTGTTGATGGAGAATGGCGACATGACGAGCAGCAGACTTGTACTCCTGGTGAATATGGGATAGTGAACACTGTTCGCTTGCCTACAGAGCCTAGCTATGCAGCTCCACCTGCCAATCCAGAGATGACCCCTGGATCTAGCATGGATGTGGATACTGAGGCATTCCGACGCCTGGTCCGAATAAATGATGGATGGTTGTCAGAGGCTGTGCATAGTGTATCAGAGGCTGATCTGCAGTGCTCCCGTCACCGAATATCTGCCTTCTTGTCCACACATACTGTTTACGAGTTGCTCCCAGAGTCGGGCAAGGTTGTTGCTTTAGACATTGACTTACCTGTGAAGCAAGCTTTTCACATATTGCATGAGCAGGCAAGTTCTTTTTCTCCTTTTCTCCCCTCCATTTTGGGTATCCCAACAGCTCCTCTTTGGGATTTCAGCAAGGGGAAATTTGTTGGAGTTCTCAGTGCATCAGATTTTATTTTAATATTAAAAGAACTTGGGAAGCGTGGCTCAAACCTGACAGAGGAAGAACTTGAAACACATACTATATCTGCTTGGAAAGAGGGTAAAGCATATTTGAATGGTCAAGTGGATGGGCAAGGAAGATTCTTGTCAAGACAGTTCATTCACGCTGAACCATTCGATAATTTGAAGGATGTTGCTTTAAAGATATTGCAAAACCAGGTGGCTACAGTTCCCATAATCCATTCATCTGCAGAAGATGGTTCATTTCCACAGTTGTTGCATCTTGCTTCACTTTCTGGAATTCTAAAATGTATCTGCAGGTACTTTAGGCATTGTTCCAGCCTGTTGCCTGTGCTTCAACTACCAATTTTTGCAATTCCAGTAGGCACATGGGTCCCAAAAATTGGAGAATCGAATAGAAGGCCATTAGCTATGTTGAGACCTAGTGCTTCTCTTAGCTCAGCGTTAAACTTACTGATTCAAGCTCAAGTTAGTTCAATACCCATAGTTGACGACAACGATTCATTGCTGGATGTATATTGTCGAAGCGATATAACAGCTCTTGCAAAGGATAGAGCTTACACACACATCAATCTTGATGAAATGACCATTCATCAGGCATTGCAACTTGGACAAGATTCTTTTTCCCTTTATGAGCCACGGAGTCAACGATGTCAGATGTGTTTGCATTCCGACTCGTTGCATAAAGTGATGGATCGCTTGGCTAACCCAGGTGTTCGACGGCTTGTAATTGTGGAAGCTGGCAGCAAACGGGTAGAAGGGATAATTTCACTAAGCGACATATTCAAGTTCTTGCTTGGTTAA 1512 43.98 MFASSMDTVRDTTRTAGTMLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQAIYSLTPGYHQYKFFVDGEWRHDEQQTCTPGEYGIVNTVRLPTEPSYAAPPANPEMTPGSSMDVDTEAFRRLVRINDGWLSEAVHSVSEADLQCSRHRISAFLSTHTVYELLPESGKVVALDIDLPVKQAFHILHEQASSFSPFLPSILGIPTAPLWDFSKGKFVGVLSASDFILILKELGKRGSNLTEEELETHTISAWKEGKAYLNGQVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSSAEDGSFPQLLHLASLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNRRPLAMLRPSASLSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTIHQALQLGQDSFSLYEPRSQRCQMCLHSDSLHKVMDRLANPGVRRLVIVEAGSKRVEGIISLSDIFKFLLG 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7450884 7457472 - CmaCh08G012160.1 Cma08g01216 299911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01216 503 SUPERFAMILY CBS-domain pair 157 340 IPR046342 -
Cma08g01216 503 Pfam CBS domain 369 415 IPR000644 -
Cma08g01216 503 Pfam CBS domain 456 502 IPR000644 -
Cma08g01216 503 Gene3D Immunoglobulins 18 101 IPR013783 -
Cma08g01216 503 SUPERFAMILY E set domains 21 99 IPR014756 -
Cma08g01216 503 ProSiteProfiles CBS domain profile. 367 424 IPR000644 -
Cma08g01216 503 ProSiteProfiles CBS domain profile. 450 503 IPR000644 -
Cma08g01216 503 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 503 - -
Cma08g01216 503 Gene3D - 148 344 IPR046342 -
Cma08g01216 503 CDD E_set_AMPKbeta_like_N 22 99 - -
Cma08g01216 503 SMART cbs_1 371 419 IPR000644 -
Cma08g01216 503 SMART cbs_1 177 238 IPR000644 -
Cma08g01216 503 SMART cbs_1 453 502 IPR000644 -
Cma08g01216 503 SUPERFAMILY CBS-domain pair 367 502 IPR046342 -
Cma08g01216 503 Pfam Glycogen recognition site of AMP-activated protein kinase 21 99 IPR032640 -
Cma08g01216 503 ProSiteProfiles CBS domain profile. 171 243 IPR000644 -
Cma08g01216 503 Gene3D - 351 503 IPR046342 -
Cma08g01216 503 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01216 - - - csv:101215603 922.539
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01625 Cma-Chr4:8195065 Cma08g01216 Cma-Chr8:7450884 3.04E-06 dispersed
Cma08g01216 Cma-Chr8:7450884 Cma13g00393 Cma-Chr13:4488968 1.17E-06 dispersed
Cma08g01216 Cma-Chr8:7450884 Cma17g00313 Cma-Chr17:1671286 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g332 . Blo12g00021 . Bda08g00284 Bpe04g01128 Bpe14g01135 . Bma05g01047 Cmo08g01189 . . . . . . . . . . . . . . . Cla06g00493 Cam06g0530 Cec06g0530 Cco06g0534 Clacu06g0514 Cmu06g0516 Cre06g1287 Cone14ag0773 Cone15ag0779 . . . . Chy11g01484 . Blo02g00514 . . Bda13g00180 Bpe05g00844 . . . Sed09g0226 . . Cma08g01216 . Car08g01087 Car17g00287 Cpe12g00265 Cpe17g00011 Bhi12g02085 Tan06g2644 Cmetu11g2330 . Hepe03g0116 . Lcy13g0190 . . . . . . . Lsi09g01414 . . Cme11g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004087 3 2 2 1 3 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01216 Cma_Chr08 FPKM 21.291594 23.390841 17.072723 19.116537 20.017626 24.069141 22.443975 18.778564 18.811926 20.136257