Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01217 ATGGAGAAGCGATATGATCGGAATCTAACTTCGAACCCTAGAACAGAGAGACGGATTACTCGAACAGCATCGACAGTGCGATCGCCTTTTGACGATCGTCCTGTTCAAGAGAAGCCAATATCGATTCCGCTTCTCCGAAGGACAATGATTGTTGGAACTAGGGTTTTTGGTTCACATCTAATGGCGGGCTCTATGGAGCCAATGATGATGATGAAGGATTCCATTGGCATGGAAGATGGCGAAGCTTCTTGCTATTACAAGGAGAGTGGCCGTGATGTTGACCCTGATATTACTCTCTCTTACATTGATGAGAAGATTGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTCGAAAGGGGAGTTTCAGCTGAAAACTTAGGGTCAAAGTTTGGTGGTTATGGCTCATTTTTGCCTACATACGAACACCATCCTTCCATTTTGCCTCACCAGAGTAATCAACAAAGAGAATGCAAGGCAGCACCATCTCCGGATAATGTGCTCTTGAAGGGCTCTTCTCAGAATCCTAAAGTTCCACCATCTGGGAGGCCAGAAGCTGTTGTCTGCAATACTATTCCCCCTCGCAATGCAAGGGAAACTTCTGGCAGTATCTCTGGCAGAGTAGATTCATGCTTGCCAGCTACTAAAGTGACCAATAGTTGCCCTTCGAAAGATGAAGCTTCAATCAGCTTAGGTTGTCCGATGTACAAAAGATCGCTCAAACTTCGAATTAAAGTTGGTTCTAACAGTACTGGATTGAAAAATGCAGCAATATACAGTGGCCTTGGACTTGATGACTCTCCACCTTCATCAGAAAAAACCTCTGACGTAAATGAAGGGATGCTGCCCATATCTCAATGCCCACCAGATGTGTCTCTGACTAAGATAATTGAGGAGATGACTGCTTTCCCAGTGCCTGATGGAGCATTGATATCACCTCTTCACGAGAGCCTACTTGGGTTGTCAAGAAAAGAAAAACCGCTTCAAGAAACCAAATACGTTCTTTTCCCGAAGGATAAAAAAGATGGTTTGGCGAAGCTAGCCGATGAGACCGACAGTACATTGGTTGAGAATAAGAAAAAGGAGGTGAGGCATATAGAAAGGCATGTCAGTTATAAGAACGAAGTTTGTGCTTCTCTTGGGAAGGAGACGACTACTCTCGTGAATGGAAAATTAGAAAATGAAGCTTTTGAAAGCAAGAATTTTGTTTCTAATAAGCTTCCATTCGAACTTGTTTCCGGGGGTATGATGTCCAGTGCTTACTTGGACCCACAAAAGAAGAAGCTTTCTTGTAAAACTACACTGCACAAAGCAGAAACAGACACAGACACAGACAAAGGATCAATTAAGAAAGAAAAGTCTGAAATTGTTGGCAAGAAGAAATTAGAAGTGACGCAGACTGCTAGTAGGAAAACAGCTGGTTCAGTCGAGAAAGGCTTTGAGTTTAGGAGTAAAGCATCGAAAATTAGAAAGGACACTGATTCTGACACTCCTGAATCAGAAAATAGAAGGCACAGCAATCAGAAGGCAGGAGCAATCAATAGAGGTTCTTTTAACAGCTCGGGGCTAGATGGAAACCGTAAAAGTAAGGGTGTAATTGATAGGACTTCTGGTGACTTGCGAAAGGCCAAACGATTAGATGACAGTGAAAACAAAATGTCCAAATCCTCGGTGGTGGTTGAACCATCCGTGGTGACTCCTGTCGATGAATGGGTATGCTGTGACAGTTGCCAAAAGTGGCGCCTTTTGCCCTTTGGGAAAAAACCAAAACTTCCTGAAAAATGGTTGTGCAGCATGCTTAATTGGCTCCCTGGGATGAACCGATGTGACATTAGCGAGGAGGAGACAACGGAGAAGCTTTATGCTTTGTACCAGCTACCATTGCCCGGGAGTGGAGATGTTTCGCAGAAACATGCCAATGGACTAACATCAGGCGATACTTCAAAGCAAGGAAAAAGGAAAGATACTTCGAAGGAAATACAAAATCCAGTTAGCAGAAATGACTCGAGTCACGTCAAAAGTTCTCTGAAAAACCAGCAGCTGGAGTTGAGGAAAAATAAAAGTCTTAATGGTTTCAGTAATCCTCCGGATCAATTGAGAAATTCAAGGGATAAATCTTCTAGTGACCTGCACAACTTGGTAGAGGGAAAGAACAGAGGTCAGCTGAAAGAAAAATCCATTGATAGAGGTGGGGAAGTTATGCTGAAGCACGGTAACGTTGGTTTAAAGATGCACAAAAAATTGAACGTGGACAATGAAATGAAAATTTCATCGAAGAAACAGGGAGAAACAACTGGTATCTCTGTTGATCAAGTTAATGATATAAGTGCTTGCACAAACAAAAGGAAACTGAAGGATTGTCAGGATGTTCAAAAATCTCATAACAGTTCACTTCATGAACCTGTGCTATCAAAGGAAGAAACTTGTGAAAGATTGAATAAGAAAAAGAAATCCAATGTGTCAAATGGTTTTGCTGGTGGTACGGAAGAAATCAGCAAGGATAAGGAACCGAAAATGCCAAACAATAAGATTACTCATAGACAAACTTCTGTTGGTACGGAGTTACCAAAGAAGAATTTAGGTGTTCGACAAGTTTCAGTGGCAGCTAACTCTACCTCTTCAAATGTTTCTCAACCTCATTTAACTAAAGCCAAATTTGCAGTGAAAGTGTCTCCTGTTGTATCAGTTTCATCATCTCCCATTAAGACATCCAGCCTTGATCGGCCTAGGTTTTGCAATAATCATATAGGCGACAGTGTGGAACCGAGCCACAAGAAACGCAAGAACATGTTTCCTGATATGGAGTTTTGCACAGAGAATAAGGTTCTACTTCCGGCTTCTAATGAGAAGGACAAAAGTATCTCGTCTGATGTGGAGCTTGATAAGTTGAAGGCTTCTGATGGAATGTCCAAGCGCTCAAAGAAGAGCACGACATATGTGCCAGAGGTTGATTCCTACCACGATGCAGCTTGTCCAAATGGCACAGGTGAAATTGAAGGAAGTATTCCTCAAAAGCATGGTATAAAGTTAACTAAAAAAGAGACGATTCATGTCGGTGCTGAAGGATTGAAATCCCCTCGAAACCTAAAGGGTTATGAAGATCAGAGGTCAAATAGAGGAGTTGGACTTCAGATGAAGCGAAGTCGGGATTCTGAAGCAGGGATTAAAGGTGTTCTGAGGACAGTAGAAAGAGGTGAATGCAAAGAAGAACCGTCATGTCTTGGTGGTGACTCTTTACAAGTTTCTTCTAGGGCGGGCAATTCTCATCAGCTTTCCGCTGATGCCCCTAAAAGTGATGATGCAGTAGAGTCGAAGGCATTAAAAGAACGAACGAAATCCTCCGATCAGACTGCATTTAATACATTGAAAGAAGCCAAAAAACTTAAAGACAAGGCAGATAATCTCAAGGGTGCTGGATTCATTTTTGAAAGTAATGAGCTCTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTTTAGAGACTCCTAACAATGCGACCGACAAGCATGGCGATATGACTCACATGCAGTTCTATGGCATTGCAGCTGAACTTTGCGAGATCTGTGCCCTTGAATTTCAAGGCCGCCGAGAAATGGTTGCAGCTGCATTGGCTTATAAATGTATCGAAGTAGCATACTTGCGGATAGTTTACCATAAACACTCAAGTGTCAATGGAGATCGCCTCGAGATGCAATCGTTGTTTCGTACAATTGTGCAAGGTGAATCTCCATCTTCTTCTGCATCAGATGTCGATAACTTCAGCAATCAAGGAGTTATTGACAAGATTACCTCTGACAGAGTTGGTGGAAGTCACATCTGGAATTTTGGAAACTGCACGAGTTTTGCTCGAGTCCTCGACTTTGCACGCAATATGAATTCAGCCATGGAGGCATCGGCGAAATCTCAAAGCGCCTTCGTGGCAGCAGCTAGTTCATGTGCCACTGAAAGAAAACATGTGGACTATGTTGCATCAGTTAAAAAGGTGATTGATTTCAGTTTCCAAGACGTCGGGGAACTCGTAGAGTTGGTTCGGGTTGCTATGCAGACAGTAACTCAGTCAAGTTTTTGCAGTGGTAGAGATTAG 4089 42.58 MEKRYDRNLTSNPRTERRITRTASTVRSPFDDRPVQEKPISIPLLRRTMIVGTRVFGSHLMAGSMEPMMMMKDSIGMEDGEASCYYKESGRDVDPDITLSYIDEKIERFLGHFQKDFERGVSAENLGSKFGGYGSFLPTYEHHPSILPHQSNQQRECKAAPSPDNVLLKGSSQNPKVPPSGRPEAVVCNTIPPRNARETSGSISGRVDSCLPATKVTNSCPSKDEASISLGCPMYKRSLKLRIKVGSNSTGLKNAAIYSGLGLDDSPPSSEKTSDVNEGMLPISQCPPDVSLTKIIEEMTAFPVPDGALISPLHESLLGLSRKEKPLQETKYVLFPKDKKDGLAKLADETDSTLVENKKKEVRHIERHVSYKNEVCASLGKETTTLVNGKLENEAFESKNFVSNKLPFELVSGGMMSSAYLDPQKKKLSCKTTLHKAETDTDTDKGSIKKEKSEIVGKKKLEVTQTASRKTAGSVEKGFEFRSKASKIRKDTDSDTPESENRRHSNQKAGAINRGSFNSSGLDGNRKSKGVIDRTSGDLRKAKRLDDSENKMSKSSVVVEPSVVTPVDEWVCCDSCQKWRLLPFGKKPKLPEKWLCSMLNWLPGMNRCDISEEETTEKLYALYQLPLPGSGDVSQKHANGLTSGDTSKQGKRKDTSKEIQNPVSRNDSSHVKSSLKNQQLELRKNKSLNGFSNPPDQLRNSRDKSSSDLHNLVEGKNRGQLKEKSIDRGGEVMLKHGNVGLKMHKKLNVDNEMKISSKKQGETTGISVDQVNDISACTNKRKLKDCQDVQKSHNSSLHEPVLSKEETCERLNKKKKSNVSNGFAGGTEEISKDKEPKMPNNKITHRQTSVGTELPKKNLGVRQVSVAANSTSSNVSQPHLTKAKFAVKVSPVVSVSSSPIKTSSLDRPRFCNNHIGDSVEPSHKKRKNMFPDMEFCTENKVLLPASNEKDKSISSDVELDKLKASDGMSKRSKKSTTYVPEVDSYHDAACPNGTGEIEGSIPQKHGIKLTKKETIHVGAEGLKSPRNLKGYEDQRSNRGVGLQMKRSRDSEAGIKGVLRTVERGECKEEPSCLGGDSLQVSSRAGNSHQLSADAPKSDDAVESKALKERTKSSDQTAFNTLKEAKKLKDKADNLKGAGFIFESNELYFQSALKYLHGAFLLETPNNATDKHGDMTHMQFYGIAAELCEICALEFQGRREMVAAALAYKCIEVAYLRIVYHKHSSVNGDRLEMQSLFRTIVQGESPSSSASDVDNFSNQGVIDKITSDRVGGSHIWNFGNCTSFARVLDFARNMNSAMEASAKSQSAFVAAASSCATERKHVDYVASVKKVIDFSFQDVGELVELVRVAMQTVTQSSFCSGRD 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7457386 7466507 + CmaCh08G012170.1 Cma08g01217 299912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01217 1362 MobiDBLite consensus disorder prediction 1042 1056 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 508 525 - -
Cma08g01217 1362 Gene3D - 563 620 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 794 843 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 483 507 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 794 816 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 661 700 - -
Cma08g01217 1362 PANTHER CW-TYPE ZINC-FINGER PROTEIN 70 415 - -
Cma08g01217 1362 PANTHER CW-TYPE ZINC-FINGER PROTEIN 424 1356 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 1068 1115 - -
Cma08g01217 1362 Pfam CW-type Zinc Finger 569 614 IPR011124 GO:0008270
Cma08g01217 1362 MobiDBLite consensus disorder prediction 1023 1056 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 631 710 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 1095 1111 - -
Cma08g01217 1362 ProSiteProfiles Zinc finger CW-type profile. 564 616 IPR011124 GO:0008270
Cma08g01217 1362 PANTHER CW-TYPE ZINC FINGER 70 415 - -
Cma08g01217 1362 PANTHER CW-TYPE ZINC FINGER 424 1356 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 483 555 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 527 553 - -
Cma08g01217 1362 MobiDBLite consensus disorder prediction 1075 1093 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01217 - - - cmax:111494554 2545.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01217 Cma17g00314 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01217 Cma-Chr8:7457386 Cma07g00273 Cma-Chr7:1214180 1.72E-06 dispersed
Cma17g00314 Cma-Chr17:1687631 Cma08g01217 Cma-Chr8:7457386 0 wgd
Cma17g01116 Cma-Chr17:7812656 Cma08g01217 Cma-Chr8:7457386 3.05E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01217 Cma_Chr08 FPKM 1.443407 1.726441 2.033699 2.3238 1.857046 1.745209 1.469946 4.003374 3.282465 4.054552