Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01218 ATGGCAATGGGTGAGCGGAAGACTATTGACTTAGAGCAGGGATGGGAGTTTATGCAGAAGGGAATCACAAAATTGAAGAACATTCTAGAGGGTTTGCCAGAGCCTCAGTTCAACTCTGAGGATTACATGATGCTTTACACTACTATATATAACATGTGCACCCAAAAGCCGCCACATGATTACTCCCAGCAGCTGTATGATAAATACCGGGAATCTTTCGAAGAATACATCACTTCTTTGGTCTTACCATCCTTGAGGGAGAAGCATGATGAATTCATGTTGAGAGAACTTGTCAAAAGGTGGACAAACCATAAAGTTATGGTGAGGTGGCTTTCTCGTTTCTTCCACTATCTTGATCGATACTTCATTGCTCGAAGATCACTTCCACCCCTCAATGAAGTTGGACTCACATGCTTCCGTGAATTGGTATATAAAGAGATAAACAGTAAAGTGAGGGATGCAGTAATTTCATTGATTGATCAAGAACGTGAAGGGGAGCAGATTGATAGAGGTCTACTGAAGAATGTATTGGATATATTTGTGGAGATCGGGATGGGGCAAATGGATTACTATGAAAATGACTTTGAAGCTGCCATGCTTAAAGATACTGCTGCTTATTACTCTAGGAAGGCTTCCAATTGGATCCTAGAAGATTCTTGTCCCGATTATATGCTAAAAGCGGAGGAATGCTTGAAGCGAGAAAAGGATAGAGTTTCTCACTATTTGCACTCTAGTAGCGAGCCAAAGTTATTGGAGAAAGTTCAACATGAACTGCTGTCTGTGTATGCTACCCAACTGTTGGACAAAGAGCATTCAGGATGCCATGCATTGCTTAGAGACGACAAGGTGGAAGATTTGTCGAGGATGTTTCGTCTCTTTTCCAAAATACCCAAGGGATTGGAACCAGTTTCCAACATATTCAAGCAGCACGTCACTGCTGAAGGAATAGCATTGGTCAAACAGGCAGAAGATGCTGCAAGTAACAAGAAGGCCGAGAAAAAGGACATAGTTGGTTTGCAGGAACAGGTTTTTGTCAGAAAAGTGATTGAGCTTCACGACAAGTACTTGGCTTATGTGAATGGTTGTTTCCAAAACCACACTCTTTTTCACAAGGCTCTCAAGGAAGCTTTTGAAGTCTTTTGTAATAAGGGTGTTGCTGGAAGTTCTAGTGCAGAATTACTTGCCACCTTTTGTGATAACATCCTTAAGAAAGGAGGAAGTGAAAAGTTGAGTGATGAAGCAATAGAGGAGACACTTGAGAAGGTGGTGAAGTTGCTTGCTTATATCAGCGACAAAGATTTGTTTGCTGAATTTTATAGAAAAAAACTTGCCCGAAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCACGAGAGAAGTATATTGACCAAATTGAAGCAACAATGTGGTGGTCAGTTCACCTCTAAGATGGAGGGGATGGTCACTGATTTGACATTGGCAAGGGAGAACCAAACTAATTTCGAGGAGTATCTGAGCAATAATCCACAAGCTAGTCCAGGGATCGACTTAACTGTTACTGTTTTGACGACTGGTTTTTGGCCAAGCTACAAGTCGTTTGACCTCAATCTGCCAGCAGAGATGGTAAAATGTGTTGAAGTTTTCAAAGAGTTTTATCAAACAAAAACCAAGCATAGAAAACTTACGTGGATTTACTCATTGGGTACGTGTAATATCAGTGGAAAATTTGAACCAAAAACGATGGAACTGATTGTGACAACTTATCAGGCTTCTGCCCTGCTGCTATTTAATTCCTCAGATAGATTAAGTTACTCCGAAATCATGACACAATTAAACTTGGGTGATGATGATGTTGTTAGACTACTCCACTCATTGTCATGTGCCAAGTACAAAATTCTTAACAAGGAGCCAAGCACGAAGACCATCTCTCCCAATGATCATTTCGAGTTCAATGCGAAATTCACTGACAAAATGAGGAGAATCAAGATCCCTCTTCCGCCTGTGGATGAGAAAAAGAAAGTAATTGAAGATGTCGACAAGGATAGAAGATATGCTATCGATGCTTCAATTGTGCGTATCATGAAGAGTCGTAAAGTTTTGGGTCACCAGCAGTTAGTGATGGAGTGCGTTGAGCAATTGGGTCGTATGTTCAAGCCTGATTTCAAGGCGATTAAGAAGAGAATCGAAGATCTGATCACCCGGGACTATCTAGAAAGAGACAAAGACAACCCCCACTTGTTTAGTCTTCCTTTTGCCCTCAACGAACGGCCGCCTTTGCAAACCATTGAAAATCTCAGTCACCATCTTCGAAGCTGCAAGGATTTGGTATCTTCAACCTCCATCCACTCCATAGCCCTTAAGCTTGGATTCTTAAACCAAACTATCACCGCCAACCATCTCATCAATTGCTATGTCAGATTCCGTAGAGTTGCAATTGCACACCAACTGTTCGACGAAATGCCTACCCGAAATGTTGTCTCATGGACCTCGCTTATGGCAGGATACGTCAACGATGGTCAACCATGTATCGCTCTATCGCTGTTTGGGGCAATGTCGAGAACCTCAGTTGTGCCCAACGACTTCACTTTCGCAACCGCAATCAAGGCCTGCTCGATCCTGTCGAATTTGAGAGATGGTGAAAAATTCCATGCCTGTATGGAGATTTTTGGTTATGGAGGGAACGTTGTGGTGTGTTCTTCGCTTATTGATATGTATGGGAAGTGTAACAATGTTATTCGAGCCAGGAGAGTCTTTGATTCCATGTCTTGCAAGAACATCATTTCTTGGACTTCAATGATCGCTGCTTATGCTCAGAACGCACATAGCGACGATGCATTAAAACTATTTAGGGAGTTCGGTAGCTCGAGTTGGGAACATCCAAATCATTTCATGTTGGCTAGTGTGATTAGTGCTTGTGCATGCTTGGGCAGGTTGGTTTCGGGAAAAGTCGTGCATAGTGCAGCGATTCGTCTTGGCTGTGATTCGAACGATGTTGTTGCTAGCGTGTTGGTTGATATGTATGCTAAATGTGGGAGTCTTGAGTATTCTGATAGGGTCTTTAAAAGAATTTTAAACCCTTGTGTTATTTCTTATACTTCAATGATTGTGAGCACAGCGAAGTATGGACTTGGGAGACAGTCCCTTGAACTCTTTGAAGAAATGGTGAGAAAAGGGTTGAAGCCTAACCATGTCACTTTTGTTGGTGTCTTGCATGCTTGTAGCCATTCAGGGCTTCCTGATGAGGGCCTTCATTATTTGACTTCCATGTATGAGAAACATGGGATAATGCCCGAGACTAAGCATTATACGTGTGTCGTCGACATGCTAGCTCGAGCAGGCGAGTTAGATAAAGCATACCAGCTAGCAAAATCCATGAAGGCAATGCCTGATGACGACCAGGCGCTGTTGTGGGGAGCGCTACTTTCGACTAGTAGGCTTCATGGGAGGGTAGATATTGCAGCGGAAGCCTGTCAACGACTGGTCGATGCCAATAGACAAGTCGCGGGTGCATACGTCACTTTGTCGAATGCGTATGCATCGGCTGGGGATATGGAGAAGGCTCAGAGACTTCGAGTTGAGATGAAGCATAGTGGTGTCTATAAAGAACCAGGATGCAGTTGGGTTGAGATAAAAGATTCGAGTTACGTATTCTATGCTGGGGATGTTATGTCGTGCCCACGAGGCAACGAAGTGTTGCATTTACTACGAGAGTTGGAACGAAAAATGAAGGGTCGAGGCTATTCGAGAGGGAGCAAAGGATTGGTGTTTGTTGATATTGAAGAGGAGGCAGAAGAAGAGAAGGTTTGGTTGCACAGTGAGAGATTGGCATTGGGGTTTTGTTTGATTAGCATTCCTGAAGGACTCACCATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCACGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAGAGAGACTTTGTAGTTAGAGATGTCAACAGATTTCATCATTTCAAAACTGGGTATTGTACTTGCAATGATTTCTGGTAA 3999 42.76 MAMGERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFNSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSLVLPSLREKHDEFMLRELVKRWTNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYKEINSKVRDAVISLIDQEREGEQIDRGLLKNVLDIFVEIGMGQMDYYENDFEAAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYATQLLDKEHSGCHALLRDDKVEDLSRMFRLFSKIPKGLEPVSNIFKQHVTAEGIALVKQAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNGCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLSNNPQASPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEIMTQLNLGDDDVVRLLHSLSCAKYKILNKEPSTKTISPNDHFEFNAKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPHLFSLPFALNERPPLQTIENLSHHLRSCKDLVSSTSIHSIALKLGFLNQTITANHLINCYVRFRRVAIAHQLFDEMPTRNVVSWTSLMAGYVNDGQPCIALSLFGAMSRTSVVPNDFTFATAIKACSILSNLRDGEKFHACMEIFGYGGNVVVCSSLIDMYGKCNNVIRARRVFDSMSCKNIISWTSMIAAYAQNAHSDDALKLFREFGSSSWEHPNHFMLASVISACACLGRLVSGKVVHSAAIRLGCDSNDVVASVLVDMYAKCGSLEYSDRVFKRILNPCVISYTSMIVSTAKYGLGRQSLELFEEMVRKGLKPNHVTFVGVLHACSHSGLPDEGLHYLTSMYEKHGIMPETKHYTCVVDMLARAGELDKAYQLAKSMKAMPDDDQALLWGALLSTSRLHGRVDIAAEACQRLVDANRQVAGAYVTLSNAYASAGDMEKAQRLRVEMKHSGVYKEPGCSWVEIKDSSYVFYAGDVMSCPRGNEVLHLLRELERKMKGRGYSRGSKGLVFVDIEEEAEEEKVWLHSERLALGFCLISIPEGLTIRIMKNLRMCSDCHEAFKLISEIVERDFVVRDVNRFHHFKTGYCTCNDFW 1332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7467054 7475965 - CmaCh08G012180.1 Cma08g01218 299913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01218 1332 PANTHER CULLIN 3 741 IPR045093 -
Cma08g01218 1332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 918 952 IPR002885 -
Cma08g01218 1332 SUPERFAMILY Winged helix DNA-binding domain 659 740 IPR036390 -
Cma08g01218 1332 Pfam PPR repeat 889 919 IPR002885 -
Cma08g01218 1332 Pfam PPR repeat 920 944 IPR002885 -
Cma08g01218 1332 Pfam PPR repeat 1094 1119 IPR002885 -
Cma08g01218 1332 Coils Coil 322 342 - -
Cma08g01218 1332 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Cma08g01218 1332 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Cma08g01218 1332 Pfam DYW family of nucleic acid deaminases 1247 1332 IPR032867 GO:0008270
Cma08g01218 1332 Gene3D - 661 740 IPR036388 -
Cma08g01218 1332 Pfam E motif 1141 1202 IPR046848 -
Cma08g01218 1332 TIGRFAM PPR: pentatricopeptide repeat domain 789 818 IPR002885 -
Cma08g01218 1332 TIGRFAM PPR: pentatricopeptide repeat domain 920 951 IPR002885 -
Cma08g01218 1332 TIGRFAM PPR: pentatricopeptide repeat domain 889 919 IPR002885 -
Cma08g01218 1332 TIGRFAM PPR: pentatricopeptide repeat domain 1022 1055 IPR002885 -
Cma08g01218 1332 PANTHER CULLIN 3B 3 741 - -
Cma08g01218 1332 Gene3D Cullin Repeats 142 263 - -
Cma08g01218 1332 Gene3D Cullin Repeats 4 141 - -
Cma08g01218 1332 Pfam PPR repeat family 1019 1067 IPR002885 -
Cma08g01218 1332 Pfam PPR repeat family 816 863 IPR002885 -
Cma08g01218 1332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 817 851 IPR002885 -
Cma08g01218 1332 Gene3D Cullin Repeats 390 503 - -
Cma08g01218 1332 Gene3D Tetratricopeptide repeat domain 836 971 IPR011990 GO:0005515
Cma08g01218 1332 Gene3D Tetratricopeptide repeat domain 1019 1263 IPR011990 GO:0005515
Cma08g01218 1332 SMART cul_2 420 569 IPR016158 -
Cma08g01218 1332 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Cma08g01218 1332 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Cma08g01218 1332 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Cma08g01218 1332 Gene3D Cullin Repeats 267 389 - -
Cma08g01218 1332 Pfam Cullin family 25 647 IPR001373 GO:0006511|GO:0031625
Cma08g01218 1332 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Cma08g01218 1332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1020 1054 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01218 K03347 CUL1, CDC53; cullin 1 - csv:101216323 1455.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01218 Cma-Chr8:7467054 Cma13g00326 Cma-Chr13:3793592 3.82E-16 dispersed
Cma18g00474 Cma-Chr18:2668897 Cma08g01218 Cma-Chr8:7467054 4.84E-111 dispersed
Cma05g00889 Cma-Chr5:6718427 Cma08g01218 Cma-Chr8:7467054 3.85E-11 transposed
Cma17g00315 Cma-Chr17:1698085 Cma08g01218 Cma-Chr8:7467054 0 wgd
Cma06g01489 Cma-Chr6:9468199 Cma08g01218 Cma-Chr8:7467054 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01218 Cma_Chr08 FPKM 23.902039 27.391266 26.199287 26.562778 17.792969 20.022907 18.471813 35.479977 32.444981 35.186653