Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01227 ATGCCACTCAGTTCTCTCTTGCTCTCTGCCCGGCGGCTGTTCCTGCAAAATTTTCAAGAACCTTTTCGTCTCCTTCTCAGAAACCCTAATTCTACTCCTGAAGGCAAATTTTCGGCTTCAGGTTTTGCATTAATGGAGGGCTCTTTAGGGCAAAAGCATGAGCATCATGAATTCACTTTGGTTTCGATTTCTAAGCTTCCTTCTTCGACTTCGACGTCTTCTTCGTCCACTTCGTCGACGCCGGTGGTTGCTCGATTCGGAGGCGAGTCCGGCGCGGCGGAGCTTCGGTTCCGGCAGGAGGCCGATTCCGATGACTTAGCGTTCGATCTTCGGACTTCTCAGATATTTCGGTTAGGCTCTGTTCAGTCAGTGTGCATATCCAAAGACGATGTCACTAAAGAGAAATCACATTCCAGAGGAGTTACCATTCAATTTAGGAACGAGGAAGAGAGCAGTGCATTTCATTCTGCTTTTGATAAGAGGAAGGAGGATGATATTGTCCAAGGCACCCATTTACCAAATGGCACCATTTCTTCCTTGAAAAGCAAGTTTGATGATAAAATAGAATCATCTTCCGCTAAGATGTACTTCCACTACTATGGGCAACTTTTACATCAACAAAATATGTTGCAGGATTATGTGAGGACAGGAACATATTACGCAGCTGTGATGGAAAATCGTGCTGACTTCACAGGTCGTGTGGTTGTTGATGTCGGTGCTGGTAGTGGTATTTTGTCTTTATTTGCTGCTCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCTGAGTATGCTCGTGTATTAATTGCTGGGAACCCTGCCTTGAGTCAACGAATCACTGTGATTAAAGGCAAAGTTGAGGATGTTGAATTGCCCGAGAAAGCAGACATTTTAATCTCAGAGCCAATGGGCACTCTATTGGTCAATGAAAGAATGCTGGAATCTTATGTGATCGCCCGGGATCGTTTTTTGCACCAAAATGGAAAGATGTTCCCAACTATAGGGAGGATTCACATGGCACCTTTCAGCGATGAATATCTATTTGTTGAAGTAGCTAATAAGGCTCTCTTTTGGCAGCAACAAAACTATTATGGTGTTGATTTGACAGCCTTGTACGGGTCAGCATTTCAAGGCTATTTTTCTCAGCCGGTGGTGGATGCTTTTGATTCAAGATTATTGGTGGCCCCTTCAATATCTCATGTTTTGGACTTTACAAATATTAAGGAAGAGGAACTATATGACATTGATATTCCTTTAAAATTCGTTGCTACTGTGGGTGCCAGAGTGCATGGACTGGCCTGCTGGTTTGATGTATTATTTAATGGCAGTACTGTGCAGAGGTGGCTTACCACTGCCCCTGGTGCTCCGACGACCCATTGGTACCAATTACGTTGCATCCTCTCTCAACCGCTTTATGTCATGGCGGGACAGGAAATTACTGGCAGACTTCACATGGTCGCTCACAGTGCTCAGAGTTACACGATTCATTTGACTCTATCAGCCAAAATGTGGGGTCCTGGTGCCGAGCAAGGAGGAATACTTCAGTCGTCCTCGTGCAAACTTGACTTGAAAGAGCCCTACTATAGAATGTCGCAACCACAAGCCAACCCTGTGGTCCAAGATCAGCAACAACATCAGCTAATTCCGACACAGGTTTTAGTGTGTTTCGATCTCGTACCAGATCAACAATTCAGGTCGGTCGATATTGTGACGTTAGTTTCCTCTGCATTTGATGACAATAACTCGGCAGAAGTCCTCGTTGTGCACACGTCTAACTTCCCTCAGGTAGTGAGGCTACCATTGATTATGCTTCCACAGCTTGGAATTCATTCTAGGAAGTTTAGCTCAATTATACAAAATATTTCTATACTTTGGTTAGGTGAAGTAAAAAATGATCCAAACGTCACTCTCTTCTTCTCCGAATCCAATACCCAAAATCTGTTCCTGCGAACTTCTTGTATTCTTCAAATCCTCGTGAAATTTTCCAAGTTTGAACTTCATTTTGGCGCCATAGAATCGTCTCGTTTTCGTTTGATGCGATGCAATGTCGTAGGGGTTTCGTTTCCATTTCTGCTTCTACTAATGGGCGCCCGAACTAGCAACCGTAAGCGCGATGACGAATATTCGAGCATCAAACGTTCGTATTCATCTTTGAAATCACCGGATTTTCACGTGTCGAAGAAGCTTAAATTTTCTACTATGTCTTCGGATCGGCCTGTTGTTTCGTCCAACTCGACAGTGGCTAGGCTTTCTCGGTATCCTGAAGAAACTCCGCAACTGCGTCGAGAAGTTCATGGCCCTTGCAGAGGCCTTAAATTTGGGCTCACTAGGAGCTTCTTTAGGTTTTGGGAATCGAAAAACAGCGAGCCGTCGGAACAGGACGATGTAGGGAATATTTTGTCGTACAATTACCAGATTGCGAAGCGTAATGCAATTGGTGCATTGCGATCGTTTCCGAAGGATGCCTTTGAATTGGATTCAGACACGCAAACTGAAAGAGACGCTTCTGGAGATTCGAAGGACGATGAGGAAGTTGAGGTAATAGAGGATGTTACAGTACAGGAATTGGTAGCGAAGAAGATGGAAGCTCATCAGCCATCGTCGTCTTCCGTGGTTATAGATCTGGCGGATGAAGGTTCGAAGGTTGAAGAAAACGCTGAGAAAATGCTTGGTGATTTGTCTCTAGACCGAGAAATTTCCAGTGTATCTGCTTACAAAAAGTTGCTCCAAGGTGTGGAAAAGCGGACATCTAGATTGAAAACCTTGGATTTCGAAATCGAGTTGAACGAGAAGCGTCGATCAATTCTTCAATCTCAAACTCCAAAGAAGATGCCTGAGATTCAACAGGAACTTTTTGTTCCTCTTACTCAGGACGAGGAGGCCAAGGTTGAAGCTGCACTGTCTGCTAACCGGAGTAAGGTTCTGGTGACTCATGAGAATTCAAATATTGAGATTACTGCGCAAGCTCTGCATTGTCTGAGACCAGGTGCCTGGTTAAACGATGAGGTGATTAATTTGTATCTTGAGTTGCTGAAAGAAAGGGAAAGAAGGGAGCCAGAGAAATATTTGAACTGTCATTTCTTCAATACATTCTTCTATAAAAAGTTGATAAATGGAAGAGATGGGTATGATTACAAATCTGTTAGAAGATGGACGAGCCAAAGGAAGTTGAGATATGAACTCAATGATTGTGACAAAATATTTGTGCCCATCCACAGAGAAATACATTGGTGTTTAGCCGTAATCAACAAGAAAGAGAAGAAGTTTCAGTATCTTGATTCTGTCAAGGGAATGGATTCTCGTGTTTTGAAAACATTGGCGAGATATTTTGTAGATGAGGTGAAGGACAAAAGTGGAAAAGATATTGATGTAAGTTCTTGGGGACAAGAATTTGTCAAAGACCTTCCTGAGCAATTCAATGGGTATGATTGTGGCATGTTTATGATAAAGTATACTGATTTTTATAGCAGAGGTTTGGATCTGTGTTTCAAGCAGGAACACATGCCTTATTTCCGAAGTAGAACAGCCAAGGAAATTTTGAATTTGAGAGCCAACTGA 3570 43.19 MPLSSLLLSARRLFLQNFQEPFRLLLRNPNSTPEGKFSASGFALMEGSLGQKHEHHEFTLVSISKLPSSTSTSSSSTSSTPVVARFGGESGAAELRFRQEADSDDLAFDLRTSQIFRLGSVQSVCISKDDVTKEKSHSRGVTIQFRNEEESSAFHSAFDKRKEDDIVQGTHLPNGTISSLKSKFDDKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARVLIAGNPALSQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLHQNGKMFPTIGRIHMAPFSDEYLFVEVANKALFWQQQNYYGVDLTALYGSAFQGYFSQPVVDAFDSRLLVAPSISHVLDFTNIKEEELYDIDIPLKFVATVGARVHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCILSQPLYVMAGQEITGRLHMVAHSAQSYTIHLTLSAKMWGPGAEQGGILQSSSCKLDLKEPYYRMSQPQANPVVQDQQQHQLIPTQVLVCFDLVPDQQFRSVDIVTLVSSAFDDNNSAEVLVVHTSNFPQVVRLPLIMLPQLGIHSRKFSSIIQNISILWLGEVKNDPNVTLFFSESNTQNLFLRTSCILQILVKFSKFELHFGAIESSRFRLMRCNVVGVSFPFLLLLMGARTSNRKRDDEYSSIKRSYSSLKSPDFHVSKKLKFSTMSSDRPVVSSNSTVARLSRYPEETPQLRREVHGPCRGLKFGLTRSFFRFWESKNSEPSEQDDVGNILSYNYQIAKRNAIGALRSFPKDAFELDSDTQTERDASGDSKDDEEVEVIEDVTVQELVAKKMEAHQPSSSSVVIDLADEGSKVEENAEKMLGDLSLDREISSVSAYKKLLQGVEKRTSRLKTLDFEIELNEKRRSILQSQTPKKMPEIQQELFVPLTQDEEAKVEAALSANRSKVLVTHENSNIEITAQALHCLRPGAWLNDEVINLYLELLKERERREPEKYLNCHFFNTFFYKKLINGRDGYDYKSVRRWTSQRKLRYELNDCDKIFVPIHREIHWCLAVINKKEKKFQYLDSVKGMDSRVLKTLARYFVDEVKDKSGKDIDVSSWGQEFVKDLPEQFNGYDCGMFMIKYTDFYSRGLDLCFKQEHMPYFRSRTAKEILNLRAN 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7521101 7530602 + CmaCh08G012270.1 Cma08g01227 299922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01227 1189 SUPERFAMILY Cysteine proteinases 956 1188 IPR038765 -
Cma08g01227 1189 CDD AdoMet_MTases 235 343 - -
Cma08g01227 1189 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 45 543 IPR025799 GO:0016274|GO:0018216
Cma08g01227 1189 Gene3D Adenoviral Proteinase; Chain A 956 1187 - -
Cma08g01227 1189 MobiDBLite consensus disorder prediction 827 848 - -
Cma08g01227 1189 Gene3D - 338 561 - -
Cma08g01227 1189 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 45 543 - -
Cma08g01227 1189 Pfam Ulp1 protease family, C-terminal catalytic domain 1002 1183 IPR003653 GO:0006508|GO:0008234
Cma08g01227 1189 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 189 504 IPR025799 GO:0016274|GO:0018216
Cma08g01227 1189 MobiDBLite consensus disorder prediction 827 844 - -
Cma08g01227 1189 ProSiteProfiles Ubiquitin-like protease family profile. 987 1159 IPR003653 GO:0006508|GO:0008234
Cma08g01227 1189 Pfam Ribosomal protein L11 methyltransferase (PrmA) 231 304 - -
Cma08g01227 1189 Gene3D Vaccinia Virus protein VP39 176 336 IPR029063 -
Cma08g01227 1189 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 199 510 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01227 K05931 CARM1, PRMT4; type I protein arginine methyltransferase [EC:2.1.1.319] - csv:101217747 913.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01227 Cma17g00326 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01227 Cma-Chr8:7521101 Cma10g00703 Cma-Chr10:3160687 4.26E-52 dispersed
Cma17g00326 Cma-Chr17:1767417 Cma08g01227 Cma-Chr8:7521101 0 transposed
Cma17g00325 Cma-Chr17:1761730 Cma08g01227 Cma-Chr8:7521101 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005574 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01227 Cma_Chr08 FPKM 8.575559 8.793882 9.910999 9.833755 16.773296 15.35577 16.272543 11.751707 11.021236 11.953611