Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01228 ATGGGCGGCCAGATGCAGCAGAACAATGCTGCGGCGGCGACTGCCCTTTACGACCACGGCGGCGGTGGGACCCTGCATAATGCAGGCCCCACTAACGACGCTGGTGATGCGGTCATGGCTCGGTGGCTCCAGTCCGCTGGCTTGCAGCATCTGGCTTCTCCGTTGGCTGATCAGCGCTCCCTCCTAATGCAGAGTTATGGAGCACAATCTGCCGAAGAGAAACAGAGGCTTTTAAAACTGATGAGAAACCTGAATTTTGGTGGGGAGTCTGGATCTGAACCGCATACACCTACTGCCCAAGCTTCAGGAGCACTTGGTGCAATGGATGGCTATTATTCTCCCGACTTTAGGGGAGATTTTGGTGCTGGACTTCTGGATCTCCATGCTATGGATGATACCGAGCTTTTGTCCGAGCACATTATCCCAGAGTCATTTGACCCTTCGCCATTCATTCCTAGTGGTACTAGAGAATTTGACGATGGGTTTAATGTAGCTAGCAGCAGGCAGCAAAGAAGCCAAGCTGATGAAGATGCCCTGGCTACATTACCTGTGATTGAAAAGGAGAATGTTGTCAGAGAAAATAACGTGGCTAAAATCAAAGTTGTGGTGCGGAAGAGACCATTAAACAAGAAGGAGCTTGCTCGTAAGGAAGACGATATTGTATCAGTATGCGACAATGCTTCTTTGACTGTCCATGAACCAAAACTAAAGGTGGACTTGACTGCATATGTGGAAAAGCATGAATTCTGCTTTGATGCGGTTCTTGATGAGCATGTTACCAATGATGAGGTTTATAGGGTTACTGTGCAACCAATTATTCCCATCATCTTTGAAAGGACAAAGGCTACATGCTTTGCTTATGGTCAGACAGGTAGTGGCAAGACGTTTACAATGCAACCATTACCTCTCAGGGCTGCTGAAGACCTTGTTAGATTGTTACGTCAGCCAGTTTATCGCAATCAGAAATTCAAGTTGTGGCTTAGCTTTTTTGAGATATATGGTGGAAAATTATTTGATCTACTCAGTGAAAGAAAGAAGCTTTGCATGAGAGAAGATGGACGGCAGCAGGTTTGTATTGTTGGGCTTCAAGAATTTGAAGTGTCTGATGTACAAATTGTCAAAGAATATATTGAGAAGGGAAATGCAGCCAGGAGTACAGGTTCCACTGGTGCCAATGAGGAGTCTTCAAGGTCACATGCTATATTGCAACTTGCTGTTAAGAAACATCCCGAAGTAAAGGAATCGAGAAGGAACAATGATGGAAATGAGTTGAAAAGTGGGAAACTTGTTGGGAAAGTCTCTTTTATTGATTTGGCTGGTAGCGAAAGAGGTGCTGATACAACTGATAATGACCGTCAGACAAGGATTGAGGGAGCAGAAATCAACAAAAGTCTTTTGGCACTGAAGGAATGCATTCGTGCCTTGGACAATGATCAGATTCATATCCCCTTCCGTGGAAGTAAACTTACAGAAGTGCTCCGTGATTCCTTTGTTGGCAACTCGAGAACTGTTATGATATCGTGCATTTCTCCAAATGCTGGTTCATGTGAACATACTCTCAACACTTTGAGATATGCTGACCGGGTCAAAAGTTTGTCCAAAAGCGGAAATACAAAGAAGGATCAGGCTGTAAGTTCCAGTCAACCAATAGCTAGAGATGTTACTTCAGCCCCGTCTATTCCAATTCCCATTGAAGCAGAAGATGTTAATATGCTGTGCCAAGAGGTGAAATTAGGGGGGGAATTGGGGAGAAGGGTTCCAGAGAAGGAAAGTCTCTCCTCTTCCAACTTTGACATGCCGACTTCTGCTTTGCCATTAAGCAATGCCTTTCATGCACGAGATGAAAAAAGTTTGGGCGTAACTGTAGCTTCTGCATCATTCGACAAGGAACCACTTGAAATGAGGAGCATTCATGGCGATCCAACCAGTCGTAAGGTTCCCATATACTCCCACAACTTAAATGATACAGAGGAGAAGGTGCAAAAGGTATCGCCACCTCGAAGAAAATCATCCCGAGATGAAAAATCAGAGAAGGTGGGGAGCTGGCAGAAGAAAGATAGCAGCAGCGTGCCTGATCTCTCTACTTCACGCTTGAAGCAGTATGGTGCAGGAATTTCTAACGCAAATGATGCCGGATCCAGAAAGTCTGAATCTGAACCAACTTCTGATGGCAATATTAATGCAATACTTGAGGAAGAAGAGGCGTTAATTGCTGCTCATCGAAAGGAAATTGAGGACACCATGGAGATAGTGCGCGAAGAAATGAAACTGTTGGCAGAAGTGGATCAACCAGGGAGCCACATTGAGAACTACGTGACTCAGTTGAGTTTTGTGCTGTCACGAAAGGCTGCAGGATTGGTGAGTCTTCAAGCACGCCTTGCAAGGTTTCAGCATAGACTTAAAGAACAAGAAATACTGAGCCGAAAAAGAGTACCGCGTTAG 2442 45.13 MGGQMQQNNAAAATALYDHGGGGTLHNAGPTNDAGDAVMARWLQSAGLQHLASPLADQRSLLMQSYGAQSAEEKQRLLKLMRNLNFGGESGSEPHTPTAQASGALGAMDGYYSPDFRGDFGAGLLDLHAMDDTELLSEHIIPESFDPSPFIPSGTREFDDGFNVASSRQQRSQADEDALATLPVIEKENVVRENNVAKIKVVVRKRPLNKKELARKEDDIVSVCDNASLTVHEPKLKVDLTAYVEKHEFCFDAVLDEHVTNDEVYRVTVQPIIPIIFERTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLRQPVYRNQKFKLWLSFFEIYGGKLFDLLSERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAVKKHPEVKESRRNNDGNELKSGKLVGKVSFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNTKKDQAVSSSQPIARDVTSAPSIPIPIEAEDVNMLCQEVKLGGELGRRVPEKESLSSSNFDMPTSALPLSNAFHARDEKSLGVTVASASFDKEPLEMRSIHGDPTSRKVPIYSHNLNDTEEKVQKVSPPRRKSSRDEKSEKVGSWQKKDSSSVPDLSTSRLKQYGAGISNANDAGSRKSESEPTSDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSHIENYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7530734 7537518 - CmaCh08G012280.1 Cma08g01228 299923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01228 813 CDD KISc_KIF2_like 198 530 - -
Cma08g01228 813 MobiDBLite consensus disorder prediction 651 682 - -
Cma08g01228 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 532 IPR027417 -
Cma08g01228 813 PRINTS Kinesin heavy chain signature 279 300 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 PRINTS Kinesin heavy chain signature 389 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 PRINTS Kinesin heavy chain signature 432 450 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 PRINTS Kinesin heavy chain signature 482 503 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 Coils Coil 730 761 - -
Cma08g01228 813 ProSiteProfiles Kinesin motor domain profile. 198 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 Pfam Kinesin motor domain 204 531 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 SMART kinesin_4 196 538 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma08g01228 813 MobiDBLite consensus disorder prediction 633 725 - -
Cma08g01228 813 MobiDBLite consensus disorder prediction 683 725 - -
Cma08g01228 813 ProSitePatterns Kinesin motor domain signature. 431 442 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma08g01228 813 PANTHER KINESIN-RELATED PROTEIN 6 1 812 - -
Cma08g01228 813 Coils Coil 786 806 - -
Cma08g01228 813 PANTHER KINESIN-LIKE PROTEIN 1 812 - -
Cma08g01228 813 Gene3D Kinesin motor domain 179 535 IPR036961 -
Cma08g01228 813 MobiDBLite consensus disorder prediction 532 551 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01228 K10393 KIF2_24, MCAK; kinesin family member 2/24 - csv:101210544 1429.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01228 Cma17g00327 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01228 Cma-Chr8:7530734 Cma11g00605 Cma-Chr11:2895639 0 dispersed
Cma17g00327 Cma-Chr17:1778518 Cma08g01228 Cma-Chr8:7530734 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007921 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01228 Cma_Chr08 FPKM 51.720505 55.215431 31.354527 30.537174 38.5881 37.926834 38.175369 19.457962 18.605394 17.045631