Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01231 ATGAAGATCGACGCCATCACGGCTCCACTTCCTGCCGCCGACGGCAAGGTCGGCGTTGGCTTAGATGATGACATGTCCGACGGGATGCAATGCAGCGACCATCCTTACCGGAGCAATCCCGGTGGAATCTGCGCCATCTGTCTTCAGGAGAAGCTCGGTAAGCTGGTGTCGTCTTCTCTTCCTCTTCCGATTCGCGGTTCGTCTTCTTCTCCGTCTTCCCCTTCGATTGGATCTGAGAGTAATGTTCATGCCGGAAGCGGCGGCGCTCCGTTGTCTACGTCCTCGTCGTCAAATGCGATTTCGATCGGAGGCTCTGCTTCGAAAACTGTCAATTTCAACGTAAATGGCGTTGTTTGTCATTATCATGATACGCGGCGGACCCGAATCCCTTTTTTGTTATCTAAAAAGAAGAAGAAAGTTGTTACTGTTGGGGCGGAGTATAATCCAAATAACGACGTCGTTTTTAAGAGGAGTAAGTCGACGACGGCGCAGAGGCGGGGGCAGTTTCCGGTTGACGGCGACGACCGCGGCGATTTTAGCTCCAGGAAGAGAGGGGGTTTTTGGTCATTTCTCCATTACCACGCGCCGTCGTCGTCCAAATCTCATGCGCCGAGGAAAATGGAGAGTAATAACAATAAGGGCACTGGTGGTAATTTGGGGGCAAACAGCACCATTTTAGAGGAAGACGAGAGCCCTAACAGCCATACGACGTCGTTTGAACGGAAGGTTTCTAGATCCAGGTCAGTCGGCTGCGGTAGCCGGAGCTTTTCCGGCGACTTCTTCGAGAGAATCTCTACTGGTTTCGGCGATTGTACTCTCCGGCGAGTCGAGTCTCAGAGAGAAAGCAAATCGTCGAAAGTCGCTACCGGTGGAAACACCAGCCACCGCAACAGCGCCGGCGTCGAACACCACTGTATCAAAGAGAGAGTAAAATGCGGCGGTTTATTCAGTGGATTCATGATGACTTCATCTTCTTCCTCTTCATCTTCCTCATCGTACGTAGCTTCATCCTCCGCCGAGGACCTCAACAGAAAACCAACTCCGGCAGCAGCGGCAGCAGGGCCGCTAATAAGCAGTGGGTGGAGCAGGACCTTGACATGGGCATTTGCTAGTCCGATGAGAGCATTCAAGCCGTCAAATTCAAAAGATCGAAAACGGTCCATAATCAGACAAGCTTCAGAGAACAATCCCACGCCGAATTTGAACGCGATTCCTTCACTGTTGGCCTATTAA 1233 51.74 MKIDAITAPLPAADGKVGVGLDDDMSDGMQCSDHPYRSNPGGICAICLQEKLGKLVSSSLPLPIRGSSSSPSSPSIGSESNVHAGSGGAPLSTSSSSNAISIGGSASKTVNFNVNGVVCHYHDTRRTRIPFLLSKKKKKVVTVGAEYNPNNDVVFKRSKSTTAQRRGQFPVDGDDRGDFSSRKRGGFWSFLHYHAPSSSKSHAPRKMESNNNKGTGGNLGANSTILEEDESPNSHTTSFERKVSRSRSVGCGSRSFSGDFFERISTGFGDCTLRRVESQRESKSSKVATGGNTSHRNSAGVEHHCIKERVKCGGLFSGFMMTSSSSSSSSSSYVASSSAEDLNRKPTPAAAAAGPLISSGWSRTLTWAFASPMRAFKPSNSKDRKRSIIRQASENNPTPNLNAIPSLLAY 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7556768 7558431 + CmaCh08G012310.1 Cma08g01231 299926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01231 410 MobiDBLite consensus disorder prediction 196 251 - -
Cma08g01231 410 MobiDBLite consensus disorder prediction 202 232 - -
Cma08g01231 410 MobiDBLite consensus disorder prediction 275 301 - -
Cma08g01231 410 PANTHER VITELLOGENIN-LIKE PROTEIN 23 409 - -
Cma08g01231 410 MobiDBLite consensus disorder prediction 63 98 - -
Cma08g01231 410 MobiDBLite consensus disorder prediction 375 400 - -
Cma08g01231 410 MobiDBLite consensus disorder prediction 283 299 - -
Cma08g01231 410 PANTHER VITELLOGENIN-LIKE PROTEIN 23 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01231 - - - cmos:111436754 710.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01231 Cma17g00333 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00333 Cma-Chr17:1824299 Cma08g01231 Cma-Chr8:7556768 0 wgd
Cma06g01509 Cma-Chr6:9561813 Cma08g01231 Cma-Chr8:7556768 4.94E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g180 . . . . . . . . Cmo08g01206 Cmo17g00323 . . Car06g01298 Car14g01434 . Cpe08g00178 Cpe03g01356 . . . . . . . Cla06g00471 Cam06g0505 Cec06g0507 Cco06g0508 Clacu06g0489 Cmu06g0491 Cre06g1263 Cone14ag0754 . Cone7ag0139 . . Csa06g01798 Chy11g01520 . . . . . . Bpe13g00669 . Bma06g01496 Sed04g1786 . Cmo14g01652 Cma08g01231 Cma17g00333 . Car17g00307 Cpe12g00283 Cpe17g00030 Bhi12g02043 Tan06g2689 Cmetu11g2207 . . . Lcy12g0740 . . . . . . . Lsi09g01440 Csa03g01479 . Cme11g02021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001838 2 2 1 1 2 2 5 2 2 2 2 2 3 3 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01231 Cma_Chr08 FPKM 8.731549 8.450529 0.206935 0.141509 3.882418 2.530573 2.249786 0.0 0.0 0.0