Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01238 ATGTCTTCCAAATCCCCTGTTTTCCCCTTCCCTGAACCTCAACACTTCAGCGACTATGGCTTCGACCCCCAAATCGACTATTTTCAGGTTTTGGAAGAAGCAAGGAAACACAGACGAGAGGGTTCGAGATCCATAGACTCCATTCATTTCAAGCTCCAAAAGCCTATTTCCAAAGACGATTCTATCAAAACCAAGAAGAAAAAACGGTGGTGGAAAAACGCTCTTCTCTTCTTCAAATGGAAATGGATTCACCACCAAAACGACGCTGTTTTCACCCACCACCACGACGTTCACCAAGCCAGAGCACGAGCTTTCCGCGCCTCTATCTCCGGTCCGGTTTACGTAACTGAAAGCCGTAGCGGTTCCAACACGCCGCTACGTTCCACCACCCGACCCACATCCGGTCCACTCGCCGGAACGCTAACGCCGACGAGAAAAACCGACATCCAAATTCCGTATCTCAGCCTCCGAGAACTGAACATGGAGCAACAACAATACAGAAACTCCACGTCAGCAGCCATGCCCATTTACTTAGTCACTTGA 543 49.36 MSSKSPVFPFPEPQHFSDYGFDPQIDYFQVLEEARKHRREGSRSIDSIHFKLQKPISKDDSIKTKKKKRWWKNALLFFKWKWIHHQNDAVFTHHHDVHQARARAFRASISGPVYVTESRSGSNTPLRSTTRPTSGPLAGTLTPTRKTDIQIPYLSLRELNMEQQQYRNSTSAAMPIYLVT 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7590093 7590961 - CmaCh08G012380.1 Cma08g01238 299933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01238 180 MobiDBLite consensus disorder prediction 116 142 - -
Cma08g01238 180 PANTHER OS05G0358900 PROTEIN 1 180 - -
Cma08g01238 180 PANTHER OS05G0358900 PROTEIN-RELATED 1 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01238 - - - csv:101220317 303.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00018 Cma-Chr1:78928 Cma08g01238 Cma-Chr8:7590093 1.93E-07 dispersed
Cma08g01238 Cma-Chr8:7590093 Cma14g01223 Cma-Chr14:9724060 1.06E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g155 . . . . . . Bma04g01148 . Cmo08g01212 . . . . . . . . . . . . . . . Cla06g00465 Cam06g0497 Cec06g0500 Cco06g0499 Clacu06g0483 Cmu06g0484 Cre06g1257 . . . . . Csa06g01792 Chy11g01526 . . . . . . . . . Sed09g0252 . . Cma08g01238 . . . . Cpe17g00035 Bhi12g02038 Tan06g2695 Cmetu11g2595 . Hepe03g0089 . Lcy12g0749 . . . . . . . Lsi09g01448 . . Cme11g02029
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009079 1 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01238 Cma_Chr08 FPKM 6.85567 7.92679 17.465202 17.117052 7.752864 7.514555 8.717151 1.922809 2.255222 1.559198