Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01242 ATGTGCGGCGGTGCACTTATCTCTGGGATTATAGAAAAAAAGCGCGGTCGGAAGCTTAGTAATGGATCTCTCTGGCCCGACACCGACCATTTTTCCGACCTCCTCGGCCTTGATTATTGCGCCCTGAAAACTGAGACACCTCAGAAAAAATGCCGAGCTACGGCGGAGACAGCGGCGGTGCCGGAGCCGGAGAAGACTCGAAAGGCTCGGAAAAATATATACAGAGGAATCCGGCAGCGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGACCCACAAAAAGGCGTTAGAGTTTGGCTTGGCACTTTCAACACTGCCGAGGAAGCCGCCAGAGCCTACGATGAAGCGGCAAAAAGGATCCGAGGAGAAAAGGCTAAACTCAACTTCGCTCCTCGTCCGCAACCGTTACCGGTGTCGCAGCCTCCGGCGAAAAAACGGTGCGTTGCTCACGAGTTAACTCCAGATTGTTTCAGTTCCACCAGTTCGGCGCCGGCGAGTACACGTGTGAATAACTCGTGTGAGATCGACGGGCTTTACTACGGCGAGGAATTGGCGAGTTTGAGATCTTTCTTGGATCTGGATTTTGAAGAAGAGCAACAACCGAGTCAAGTCGGTGGGAGCGATGAGTTTGGGCAAGCTGTGGAGCTTTGGATGATGGACGACCCGTCGTTGAATGAGGAGAAATTCAGTTCGGTGGTGTAA 702 53.42 MCGGALISGIIEKKRGRKLSNGSLWPDTDHFSDLLGLDYCALKTETPQKKCRATAETAAVPEPEKTRKARKNIYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFNTAEEAARAYDEAAKRIRGEKAKLNFAPRPQPLPVSQPPAKKRCVAHELTPDCFSSTSSAPASTRVNNSCEIDGLYYGEELASLRSFLDLDFEEEQQPSQVGGSDEFGQAVELWMMDDPSLNEEKFSSVV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7602205 7603422 + CmaCh08G012420.1 Cma08g01242 299937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01242 233 PANTHER EREBP TRANSCRIPTION FACTOR 49 150 - -
Cma08g01242 233 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Cma08g01242 233 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Cma08g01242 233 Coils Coil 106 126 - -
Cma08g01242 233 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Cma08g01242 233 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Cma08g01242 233 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Cma08g01242 233 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Cma08g01242 233 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Cma08g01242 233 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Cma08g01242 233 MobiDBLite consensus disorder prediction 197 217 - -
Cma08g01242 233 PANTHER DNA-BINDING DOMAIN 49 150 IPR044808 GO:0003700|GO:0009873
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01242 K09286 EREBP; EREBP-like factor - csv:101222764 283.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01242 Cma14g01606 CCT
Cma06g01543 Cma08g01242 CCT
Cma06g01543 Cma08g01242 ECH
Cma08g01242 Cma14g01606 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01242 Cma-Chr8:7602205 Cma17g00658 Cma-Chr17:5532263 3.60E-38 dispersed
Cma14g00916 Cma-Chr14:4757847 Cma08g01242 Cma-Chr8:7602205 5.14E-42 wgd
Cma14g01606 Cma-Chr14:12073336 Cma08g01242 Cma-Chr8:7602205 1.41E-38 wgd
Cma06g01543 Cma-Chr6:9673231 Cma08g01242 Cma-Chr8:7602205 2.62E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g146 . . . . . . . . Cmo08g01215 . Cma06g01543 Cma14g01606 . Car14g01425 . . . . . . . . . . Cla06g00460 Cam06g0491 Cec06g0494 Cco06g0493 Clacu06g0477 Cmu06g0478 Cre06g1251 Cone14ag0033 Cone15ag0034 Cone11ag0474 Cone18ag1036 . Csa06g01779 Chy11g01533 . . . . . . Bpe13g00674 . Bma06g01490 Sed09g0260 . Cmo14g01642 Cma08g01242 . Car08g01117 . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla05g00674 Cam05g0740 Cec05g0747 Cco05g0747 Clacu05g0733 Cmu05g0698 Cre05g0772 Lsi09g01454 Csa03g01492 Chy06g00730 Cme11g02037
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002900 0 2 0 1 1 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 3 2 2 2 2 2 2 3 2 1 55
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35565 PF00847 AP2 1.80E-15 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01242 Cma_Chr08 FPKM 9.495868 10.098351 29.487093 28.436401 17.548307 16.01948 19.689699 68.664093 70.632919 73.200195