Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01244 ATGGATACCTCCCTGGTCGCGGGAACCCTTTCAATGGTTGCCAACAATGGCGTTGGCTTCGCCAAATTCCTCAATCGCCTCGATTTCGTATCCAATTACTACATCTCCATCACCGATTCGATCGCCGACCAGATCGCGCCGTATTCCGCCGCCGGAGCTCTTCAGTTATCAGCCGCACTGTTCCCCGTCGCAACCATTGCTCCGCCGCCTGTCAAATCTACTTCATGCCGATCGGCCTCTCGGACTTTTCTCCGTAGAAAGCGCCGCACGAAGCGTAGATTATACAGCGATGACTCCGAGGGCGGCGAAGTCAACGGATTCGGCGGCGGCGATTTTGACGGATCGTACGGCGGAGGTGGCGGTAGCGGCGGAAGTGGCTGGAATTTCGATAGATTTGGGGGGAGTGATTGGGATGAATCTTCATCCTCTTCTAATCCGGCGTATTATTTCGTTTACGAGGTGGTTTATTGGATCGCGCTCTCAAATTGTGTGCATTTCGCATTCAAGAAGGTTATTAGATTTGCAGGTGAAGCAATGAGGAACTCCGAACGAGGAAAATTGTCCATGAGATTAATCTCTGTGTGTTGA 588 51.87 MDTSLVAGTLSMVANNGVGFAKFLNRLDFVSNYYISITDSIADQIAPYSAAGALQLSAALFPVATIAPPPVKSTSCRSASRTFLRRKRRTKRRLYSDDSEGGEVNGFGGGDFDGSYGGGGGSGGSGWNFDRFGGSDWDESSSSSNPAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAMRNSERGKLSMRLISVC 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7605175 7605762 - CmaCh08G012440.1 Cma08g01244 299939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01244 195 PANTHER F3E22.8 PROTEIN 1 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01244 - - - csv:105435841 254.218
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01244 Cma17g00345 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00345 Cma-Chr17:1869798 Cma08g01244 Cma-Chr8:7605175 1.15E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g145 . . Bda03g01153 . Bpe04g01098 . . . Cmo08g01216 Cmo17g00332 . . . . . . . . . . . . . . Cla06g00459 Cam06g0490 Cec06g0493 Cco06g0492 Clacu06g0476 Cmu06g0477 Cre06g1250 . . Cone7ag0127 Cone4ag0132 . Csa06g01778 Chy11g01534 . . Blo07g00166 . . . Bpe13g00675 . Bma06g01489 Sed09g0261 . . Cma08g01244 Cma17g00345 Car08g01118 Car17g00314 Cpe12g00293 Cpe17g00039 Bhi12g02033 Tan06g2708 Cmetu11g1448 Lac11g0884 Hepe03g0080 . Lcy12g0763 . . . . . . . Lsi09g01455 . . Cme11g02038
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007084 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01244 Cma_Chr08 FPKM 4.472789 6.47556 25.612778 21.551277 2.4996 2.219227 4.684878 39.951775 38.1507 43.527264