Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01245 ATGCGAAATCTTACCATCCACCCTGCTTGGGACTCAACATTCTCGCTCGCAGGAAAAGGAGAAGGAAAAAGCCTTCAACAAGAAGACGATTCGCGATTTCCCGTTTCTCGAATTTTCTGTTTCTGTTTCTGTTTCTGTTTCTGTTTCTGTTTCTGTGGATTAACAATCTTCAATTGTGGCCGAATTCGATCAAACGAGGCTGCTGTGGCGTTGGACGGATTAGGAATGGGATCGGAGCAGTTGATGGCCGGAGGTGGGCCTCGATATGTTCAAATGCAATCGGAGCAGCCTACAGCTTCGATGTCGTCGTTTTTCTCGTTTCATCATGACGCTCCTGAGCCAACGAGGATTTTCGATGAATTGCCGAAGGCCTCAATTATTTCCGTTTCTCGCCCGGATGCCGGCGATATCAGTCCGATGCTTCTTTCTTACACAATCGAATGCCAGTACAAGCAGTTTAAATGGCGCATGTTGAAGAAAGCTTCCCATGTATTCTATTTACATTTTGCACTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGAACACACGACAGTGATCCAAGATGAGGATGGACCAGATGATGAAGCCAATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCGTCCAGTGCTGCCCTGCCTATCATTCGGCCTGCCTTAGGAAGGCAGCATTCTATGTCTGATAGAGCTAAGACTGCAATGCAAGGGTACCTGAATCACTTCTTGAGTAACATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAGTTGAAAGAGGATTATGTTATGGTGAAGCATCTACCTAAAATTGCACGGGAAGATGACGCTAGGAAATGCTGCCTATGCCGGTGTTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAGCCTGGTTTTTTGGCCTTATTGGGAGATCCTTTTGACACTCAACCAATGGATATAATAGTTTTTGATGTGCTACCTACTTCTGATGCCAATGGAGATGGACGAGTATCTTTGGCAAAGGAAATTAAGGAGCGAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAGTATTAGGATAAGAGCAAAGAACGGATCCAAGGTTAAAGACTGGGTTGCTGCAATTAATGATGCGGGACTGAGGCCTCCTGAGGGATGGTGTCATCCTCACCGTTTTGGTTCTTTTGCTCCTCCAAGGGGTTTGACAGACGATGGTAGTAAGGCTCAGTGGTTCATCGATGGTCAAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGCGGCTGGTGGCTTTGTCCAGAATTGTATCTGCGGCGTCCTTTTATTTCAAATGCTTCATCTAGGCTCGATGCTTTGCTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCCTTAAAGATTAACAGTGTTTATAGCAAGAAAAAACTTCTAGGCATCCATGAGAATGTGAGAGTATTACGCTATCCTGACCACTTCTCCAGTGGTGTGTATTTATGGTCCCACCATGAAAAACTTGTCATTGTCGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCAGAACATAAAGTTGGTGATCGTCCTCCTTCAGTATGGCCCGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAAAGATGAGTTGGATCGTGGTAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTTTGGGGACCACCTTGTCGAGACTTAGCTAGACATTTTGTCCAACGCTGGAATTATGCTAAGAGAAACAAAGCCCCAAATGAGCAGGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATACCCGAGAATTGGAGGTTGAAAGGAAGAGTTTTGACAATTCTCAAGAATCAACAGTACAGGATTCATTTTCTCGAGGATCATCTTCTCACGATATTCCTTTGCTTTTACCTCAAGAGGCTGATGGACAGGATTCTCAAAATGAAGGTCCAAAATCAAATGGACTGGAGCCCATTGCTAATCCCCTCGATCAGCCTAGTAAGATCAGCAGCAGTCTCTCGTTCTCTTTTAGGAAGATCAAAGTTGAACCCTTAGGACCAGATATGCCTCTGAAAGGCTTTGTTGATGATCTCGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCATCGTGTCAAAAGCTCAGAGTTGGAGTGGTGGGAAACACAAGACAGGGGACATGGTGGCTTTGCAGATGAATCCGGACAAGTTGGTCCGTGTGCTTCATGTCGTTGCCAGGTCATCAGAAGTGTCAGTCAATGGTCTGCTGGGACGAGTCAAACTGAAGAGAGCATTCACATTGCGTACTGCTCTCTTATAGAGAAAGCAGAACATTTTGTCTATATTGAGAATCAATTTTTTATATCAGGCCTCTCAGGAGATGATTCAATACGGAATCGTGTTTTAGAAGCATTATACCGTCGCATAATGAGAGCTTACCGTGAAAAGAAAATTTTTAGGGTCATTATTGTAATTCCACTATTGCCTGGATTTCAGGGAGGACTGGATGACAGTGGTGCAGCATCGGTTAGAGCAATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAAAATTCAATATTCCATAATCTTTATGATCTTCTTGGTTCAAAAGTTCATGATTATATATCATTTTATGGCCTCAGATCTTATGGTAAACTGTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATCGTAGATGATTGTATTGCTTTGATTGGATCGGCTAACATCAATGACAGGAGTTTACTCGGTTCTAGAGATTCTGAGATTGCTATTGTGATTGAAGATAAGGAACTTATCAATTCATATATGGGAGGACAACCATGGAAAGCGGGAAAGTTTTGTTGGAGTCTCCGCCTCTCTCTTTGGTCTGAACATCTTGGTCTTCGTCCTGGACAGATCAATCAAATAGTTGACCCAGTTTCTGACTCAACCTACAAGGATACATGGATGGGAACTGCTAAGACGAACACGACAATATACCAAGATGTATTTTCTTGTCTACCCAACGACCTCATAAATTCCAGAGCTGGACTGAGGCAAAGTGTGGCTTTCTGGAAAGAGAGGTTGGGGCACACCACAATAGATTTAGGAATTGCACCGGAGAGGCTTGAGTTTTACAAGAATGGAGAAATTGAAAGGATTGATCCAATGGAGAGATTAAGTTCAGTGAAGGGACATCTTGTCTCCTTCCCATTGGAATTCCTGAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTACTATGCATCTCAAGTTTTTCATTAA 3564 42.79 MRNLTIHPAWDSTFSLAGKGEGKSLQQEDDSRFPVSRIFCFCFCFCFCFCFCGLTIFNCGRIRSNEAAVALDGLGMGSEQLMAGGGPRYVQMQSEQPTASMSSFFSFHHDAPEPTRIFDELPKASIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHTTVIQDEDGPDDEANPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKTAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIAREDDARKCCLCRCFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDANGDGRVSLAKEIKERNPLRHSFKVTCGNRSIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTDDGSKAQWFIDGQAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFISNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKKKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDRPPSVWPGKDYYNPRESEPNSWEDTMKDELDRGKYPRMPWHDVHCALWGPPCRDLARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNTRELEVERKSFDNSQESTVQDSFSRGSSSHDIPLLLPQEADGQDSQNEGPKSNGLEPIANPLDQPSKISSSLSFSFRKIKVEPLGPDMPLKGFVDDLDHLDSHGKLSGDGKTHHRVKSSELEWWETQDRGHGGFADESGQVGPCASCRCQVIRSVSQWSAGTSQTEESIHIAYCSLIEKAEHFVYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSIFHNLYDLLGSKVHDYISFYGLRSYGKLFDGGPVATSQVYVHSKIMIVDDCIALIGSANINDRSLLGSRDSEIAIVIEDKELINSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVSDSTYKDTWMGTAKTNTTIYQDVFSCLPNDLINSRAGLRQSVAFWKERLGHTTIDLGIAPERLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7606619 7617015 + CmaCh08G012450.1 Cma08g01245 299940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01245 1187 SUPERFAMILY Phospholipase D/nuclease 824 1033 - -
Cma08g01245 1187 Gene3D Endonuclease Chain A 808 1041 - -
Cma08g01245 1187 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 984 1011 IPR001736 GO:0003824
Cma08g01245 1187 MobiDBLite consensus disorder prediction 203 225 - -
Cma08g01245 1187 SMART PH_update 291 419 IPR001849 -
Cma08g01245 1187 CDD PLDc_vPLD1_2_yPLD_like_1 445 589 - -
Cma08g01245 1187 Pfam PLD-like domain 857 1032 IPR025202 -
Cma08g01245 1187 MobiDBLite consensus disorder prediction 202 228 - -
Cma08g01245 1187 PANTHER PHOSPHOLIPASE 106 1184 - -
Cma08g01245 1187 Gene3D Endonuclease Chain A 438 701 - -
Cma08g01245 1187 SUPERFAMILY Phospholipase D/nuclease 397 671 - -
Cma08g01245 1187 MobiDBLite consensus disorder prediction 693 749 - -
Cma08g01245 1187 CDD PH_PLD 268 415 - -
Cma08g01245 1187 PIRSF PLD_euk 91 713 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cma08g01245 1187 PIRSF PLD_euk 748 1187 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cma08g01245 1187 PANTHER PHOSPHOLIPASE D 106 1184 IPR015679 -
Cma08g01245 1187 SMART pld_4 552 579 IPR001736 GO:0003824
Cma08g01245 1187 SMART pld_4 984 1011 IPR001736 GO:0003824
Cma08g01245 1187 Pfam Phospholipase D Active site motif 552 579 IPR001736 GO:0003824
Cma08g01245 1187 Gene3D - 317 415 IPR011993 -
Cma08g01245 1187 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 552 579 IPR001736 GO:0003824
Cma08g01245 1187 SUPERFAMILY PH domain-like 324 415 - -
Cma08g01245 1187 CDD PLDc_vPLD1_2_yPLD_like_2 844 1028 - -
Cma08g01245 1187 Coils Coil 173 193 - -
Cma08g01245 1187 MobiDBLite consensus disorder prediction 698 714 - -
Cma08g01245 1187 ProSiteProfiles PH domain profile. 326 417 IPR001849 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01245 Cma17g00346 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01093 Cma-Chr5:8617989 Cma08g01245 Cma-Chr8:7606619 0 dispersed
Cma08g01245 Cma-Chr8:7606619 Cma03g00651 Cma-Chr3:5505034 2.12E-18 dispersed
Cma17g00346 Cma-Chr17:1870475 Cma08g01245 Cma-Chr8:7606619 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01245 K01115 - csv:101211856 2140.15