Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01249 ATGGTGGCGAAGAGCCAGCAAAACAGTAAACCCCAAAACAGGAAGCAAATTTCAGGCAACAAGAGTTCCTCGCATGGTTCCGCTTCGAAGAAACCGAAGTTCGTAAATGACAAGCCCTCGAAGTCCCATGGCCTGGGAACTGTTGGTAAACCCTTCAAATCGAAGGTTGAAAAATCAGAAGCTAAAAAGGAACCAATTACGAAGCGAGAACATCGCCTCCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGACATTATGATTTGGAACATGAGCTTGCACATCTATGGGAGAAAATGAGGGTTCGAAATATCACCAAGGAAGATAGATCCAAATGGGTAAGTAAAGCATTAGAAAACATGAAGGGGAAGATCCCTGAAATTGCAGGTTCCCATGTGTCGTCTCGTGTGCTTCAGACGTGTGTTAAACACTGCACAGATGCCGAGAGAGAGGCAGTGTTTGAGGAACTTAAGCCTCATTTTCTCACTCTTGCTTGCAACACTTACGCAGTTCATCTAGTGAAGAAAATGTTAGATAATGCCTCGAAAAAGCAGCTGGCTGGGTTTATCTCATCTCTACATGGCCATGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTTTAGTTGTTGAACACGCATACCATTTAGCAAATGCAGCTCAGAAACAAACACTTCTATTGGAACTTTATTCGGTGGAACTCCAGCTATTTAAGGATCTCGTCTCGATGAAAGAAAGCAGGCTAGTGGATGTAATTTCAAAATTGGACATTAAAAAAGCTTCAGTCTCGCGACACATGACATCAGTAATTCAACCTATTTTGGAAAAGGGGATAGTTGACCACTCTATTATACATAGGGTTCTGATGGAATACTTTACCATTGCTGATAAGACATCTGCCGCAGATGTAATCCAACATTTGTCCAGTTCACTTCTTGTTCGAATGATTCACACTAAAGATGGATCAAGGATCGGTGTACTTTGCATAAAACATGGGAGTGCAAAGGAAAGAAAGAAAATCATCAAGGGAATGAAAGGCCATGTGAATAAGATAGCACACGAACAATATGCGGTTATGGTTCTTGTGTCCATTATCTCGGTTGTCGATGATACGAAGCTGATTAGGAAGATTATTATTAACGAGCTCGAGAAAGATTTGAAGGAGCTTATTTTGGATAAGAATGGAAGACGTGTAGTACTGCAACTACTGCGTCCCAATTGTTCGCGCTACTTCAGTCCTGATGATCTTGCTTCTTTAAATTTATCAATACCTTCTCTTTGCAACAAGTCTGAGTCAGGAGTCGATAGAGCAGAAGAAAAGGCTGATAGAGACATGGGCGAAACGGAAGGTGAGGAGGTTGATGGAGGCGAGGTTTCTGCCGAGGGCTCTGAAGCTGTAGACGGTGGTAAAAAAGATCCTCTTATCCGAAGACATGAGTTGTTGGTGGATAGCGGGCTAGCTGAGAAACTTGTCGATGTATGTGTCAACAATGCTGGGGAAATACTAAGGTCAAATTTCGGCCGAGAAGTAATGTACGAGGTTGCGATGGGGGGTGCTGATGGCGTTCTTCAATCGAAGTTGGGAGAAAAGCTGAGTGGTTTGTATGAAGCTATAGCTTCACTTGCAGCAGAGCCTAAATCTGAAGACGCAGCCGCCGGAGATGAGCATGTGCTTGAAAATTTCCACTCTAGTAGGACTATAAGAAAGCTAATCTTGGACTGCCCTGCCTTTGCCCTCACTTTGTGGACCACAGCACTTGAAGGGAAATCCAAATTGTGGGCTCAAGGTCACAGTTGTAAGATAGTCCAAGCTTTCCTGGAATCCACGGACTCAAAGGTACGTGAAATTTCAAGAGTAGAGTTACAGTCCTTGATTGACGAAGGGCTGCTCAAAATCCCAGGCACCAAGCAGTCTGCCGACAAAAGCTGA 1938 43.7 MVAKSQQNSKPQNRKQISGNKSSSHGSASKKPKFVNDKPSKSHGLGTVGKPFKSKVEKSEAKKEPITKREHRLQAKELAEARKKKRKRHYDLEHELAHLWEKMRVRNITKEDRSKWVSKALENMKGKIPEIAGSHVSSRVLQTCVKHCTDAEREAVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLAGFISSLHGHVASLLRHMVGSLVVEHAYHLANAAQKQTLLLELYSVELQLFKDLVSMKESRLVDVISKLDIKKASVSRHMTSVIQPILEKGIVDHSIIHRVLMEYFTIADKTSAADVIQHLSSSLLVRMIHTKDGSRIGVLCIKHGSAKERKKIIKGMKGHVNKIAHEQYAVMVLVSIISVVDDTKLIRKIIINELEKDLKELILDKNGRRVVLQLLRPNCSRYFSPDDLASLNLSIPSLCNKSESGVDRAEEKADRDMGETEGEEVDGGEVSAEGSEAVDGGKKDPLIRRHELLVDSGLAEKLVDVCVNNAGEILRSNFGREVMYEVAMGGADGVLQSKLGEKLSGLYEAIASLAAEPKSEDAAAGDEHVLENFHSSRTIRKLILDCPAFALTLWTTALEGKSKLWAQGHSCKIVQAFLESTDSKVREISRVELQSLIDEGLLKIPGTKQSADKS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7630189 7636159 - CmaCh08G012490.1 Cma08g01249 299944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01249 645 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 101 448 IPR033133 GO:0003723
Cma08g01249 645 MobiDBLite consensus disorder prediction 1 30 - -
Cma08g01249 645 ProSiteProfiles Pumilio RNA-binding repeat profile. 195 231 IPR001313 GO:0003723
Cma08g01249 645 SMART pum_5 346 383 IPR001313 GO:0003723
Cma08g01249 645 SMART pum_5 310 345 IPR001313 GO:0003723
Cma08g01249 645 SMART pum_5 195 230 IPR001313 GO:0003723
Cma08g01249 645 SMART pum_5 384 421 IPR001313 GO:0003723
Cma08g01249 645 SMART pum_5 123 158 IPR001313 GO:0003723
Cma08g01249 645 SMART pum_5 159 194 IPR001313 GO:0003723
Cma08g01249 645 Coils Coil 68 88 - -
Cma08g01249 645 MobiDBLite consensus disorder prediction 435 472 - -
Cma08g01249 645 MobiDBLite consensus disorder prediction 435 450 - -
Cma08g01249 645 Gene3D - 95 434 IPR011989 -
Cma08g01249 645 ProSiteProfiles Pumilio RNA-binding repeat profile. 159 194 IPR001313 GO:0003723
Cma08g01249 645 SUPERFAMILY ARM repeat 107 416 IPR016024 -
Cma08g01249 645 MobiDBLite consensus disorder prediction 53 71 - -
Cma08g01249 645 Pfam CPL (NUC119) domain 472 574 IPR012959 GO:0003723
Cma08g01249 645 PANTHER UNCHARACTERIZED 1 639 IPR040059 GO:0003723
Cma08g01249 645 MobiDBLite consensus disorder prediction 1 71 - -
Cma08g01249 645 Pfam Pumilio-family RNA binding repeat 138 160 IPR001313 GO:0003723
Cma08g01249 645 Pfam Pumilio-family RNA binding repeat 163 189 IPR001313 GO:0003723
Cma08g01249 645 Pfam Pumilio-family RNA binding repeat 199 232 IPR001313 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01249 K14844 PUF6; pumilio homology domain family member 6 - csv:101210633 1011.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01249 Cma-Chr8:7630189 Cma14g01183 Cma-Chr14:9478124 1.59E-16 dispersed
Cma08g01249 Cma-Chr8:7630189 Cma04g00204 Cma-Chr4:965695 1.54E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01249 Cma_Chr08 FPKM 13.545613 13.18126 13.712151 13.436561 19.376579 19.9958 20.258469 29.16292 28.772665 30.188414