Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01250 ATGGCGTCGTCGAATATCAGAGATCTGTTAACATCTTTTAGTCCTGATTTGCATTTCTTTGCCATCAGCTCGGGGGATGGTCGTATCAAGATCTGGGACACGTTGAAAGGTCAGATACAGACGGAGTTTGCAGATTTCTTTACAACGGATTCAACGAGCATACTAACGAAATCGGGAAAAGGGCATCTATCTGTTGATTATAAATGCATGAAATGGTTGTCATTGGAGAAAAAGAGAAAAAGAAAGCGCCAATGTTCGTTGTTGTTGTTAGGAACGGGTAGTGGTGATGTTATGGCTCTTGATGTAGCAGCTGGGGAATTGAAGTGGCAAATAAGTGATTGTCATCCTGGGGGTGTTGCTACAATTTCGTTTCCTACACACGGTTCGCGCATTTATACTGCTGGTGCCGATGGAATGCTATGCGAAATTGATTCCATGACGGGAAGCCTGTTGAGGAAGTTCAAGGCTTCTACAAAGGCAATATCCTGCATTTCTGTTTCTCCAGATGGAAAGAAAATAGCAACTGCAGCCTCGCAAATGAAGATTTTCAATTGTTCCGATCACAAAAAGATACAGAAGTTTTCCGGGCATCCTGGAGCTGTTCGATGTATGGTTTTTACCGAAGATGGAAAATACATTCTTTCATCCGGAGTTGGTGAAAGGTATATCGTTGTTTGGAGTTTAGGCGGAGAGAAAAAGCAATCAGCTAGTTGTGTTCTCGCAATGGAGCACCCTGCCATCTTCATGGACAGCAGGCGCTCGGGTGGTGGTGGAGTTGATGAAACTGCGCTGTACGTTTTGGCTATATCAGAAATTGGTGTTTGTTATTTATGGTATGGACAGAATCTCGAAGAGTTACGAAGTGTCAAGCCTACTAAAGTATTGATATCTAATAATGATATCTCCTCCAAGAGTAAAAAACGGGTAACACCCTCGATTTATGCTGCACAATTTCAAGGAATTCCGAAATCTGGGTCGGGCCAGGTTTTCCTTGCTCATGGATTGCTAGTGAAACCTTCATTTCAAAACGTCGTGGTGCACTCCGGTACTGACATAAATTTAAACAGCTCCAATGATGGAATTCTTCTGCCGAGTCATTCGGTCGGAAAATCTAAGAAGGGTTTAGATGTACAGGGAGGAGTCGTTGCATTAGATCGAGCTAATGCTGAAGATGCCTTGTGTCCAATTCCGAAGGTTTTCGATTCTCAAGAGAAACGTACCTTATATCACGATTTACATGTTGACCGCGATGATGTTATGACCGAATTGGTTGACAGTGGGAGCCAAGTAGAAGATGTTGTCGGAGTGGAGGACTCTGCAGCAGTTTGCCTGGAGGACAAACTCCGATTGTTAGGCATACTCGACAGTACAGACGATCATACATCTGAATCCATCCTTAAGTCTGCAATATTCAAAGGCATCGATCTTGAAGCTAATATGTCGCAGAAAAAGTTAAGAGAAGCGGTTTTATCGTTGGCACCTGGCGATGCATGCAAATTGCTTGGAAACTTGGTTAGCATTTGGCAATCCAGGTTGCGTAGCGGGAAGAACGTGCTACCGTGGATTTATAGTTTATTGTTGAATCACAATCAACATATCTTGTCTCAAGAACAGTCGACACAGATTCTCGATTCTTTGTTTAAGTTTACTAAATCCAAAGAGACTGCGGTTCAACCTCTTCTTCAATTATCAGGTCGTTTGCAACTGGTGTTGGCACAAATTGAAAGGGCGTCGGCCAACAAAACCGACCAAACGGTACGACATGGTCCCGAGATAGATGGAGGGGAGAGCAGCAACGACGAAGACGAAGAAGTTCACGACGTTCTTTATGGGGAAGAAGAATATGAATCTGAATTAAGCAGTGATAATGAGAATTAG 1878 43.24 MASSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTTDSTSILTKSGKGHLSVDYKCMKWLSLEKKRKRKRQCSLLLLGTGSGDVMALDVAAGELKWQISDCHPGGVATISFPTHGSRIYTAGADGMLCEIDSMTGSLLRKFKASTKAISCISVSPDGKKIATAASQMKIFNCSDHKKIQKFSGHPGAVRCMVFTEDGKYILSSGVGERYIVVWSLGGEKKQSASCVLAMEHPAIFMDSRRSGGGGVDETALYVLAISEIGVCYLWYGQNLEELRSVKPTKVLISNNDISSKSKKRVTPSIYAAQFQGIPKSGSGQVFLAHGLLVKPSFQNVVVHSGTDINLNSSNDGILLPSHSVGKSKKGLDVQGGVVALDRANAEDALCPIPKVFDSQEKRTLYHDLHVDRDDVMTELVDSGSQVEDVVGVEDSAAVCLEDKLRLLGILDSTDDHTSESILKSAIFKGIDLEANMSQKKLREAVLSLAPGDACKLLGNLVSIWQSRLRSGKNVLPWIYSLLLNHNQHILSQEQSTQILDSLFKFTKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDEDEEVHDVLYGEEEYESELSSDNEN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7637609 7642381 + CmaCh08G012500.1 Cma08g01250 299945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01250 625 MobiDBLite consensus disorder prediction 596 625 - -
Cma08g01250 625 Gene3D - 3 160 IPR015943 GO:0005515
Cma08g01250 625 PANTHER OS03G0300300 PROTEIN 1 625 - -
Cma08g01250 625 MobiDBLite consensus disorder prediction 580 625 - -
Cma08g01250 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Cma08g01250 625 Gene3D - 161 310 IPR015943 GO:0005515
Cma08g01250 625 PANTHER OS03G0300300 PROTEIN 1 625 - -
Cma08g01250 625 SMART WD40_4 187 227 IPR001680 GO:0005515
Cma08g01250 625 SMART WD40_4 104 144 IPR001680 GO:0005515
Cma08g01250 625 SMART WD40_4 147 184 IPR001680 GO:0005515
Cma08g01250 625 SMART WD40_4 2 33 IPR001680 GO:0005515
Cma08g01250 625 Pfam WD domain, G-beta repeat 6 33 IPR001680 GO:0005515
Cma08g01250 625 Pfam WD domain, G-beta repeat 190 227 IPR001680 GO:0005515
Cma08g01250 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Cma08g01250 625 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 229 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01250 K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5 - csv:101213788 1009.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00668 Cma-Chr8:4125966 Cma08g01250 Cma-Chr8:7637609 7.56E-51 dispersed
Cma08g01250 Cma-Chr8:7637609 Cma08g00343 Cma-Chr8:1961797 1.60E-09 dispersed
Cma08g01250 Cma-Chr8:7637609 Cma03g00866 Cma-Chr3:6430815 1.04E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g131 . . . . . . . . Cmo08g01221 . . . . . . . . . . . . . . . Cla06g00453 Cam06g0483 Cec06g0487 Cco06g0486 Clacu06g0470 Cmu06g0470 Cre06g1244 . . . . . Csa06g01770 Chy11g01541 . . . . . . . . . . . . Cma08g01250 . Car08g01123 . . Cpe17g00044 Bhi12g02020 . . . Hepe03g0074 . . . . . . . . . Lsi09g01461 . . Cme11g02049
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007402 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01250 Cma_Chr08 FPKM 8.794977 9.545248 8.922853 8.858857 12.626293 13.450257 12.178426 21.958963 19.402554 20.429493