Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01252 ATGGGAGAGAGCCATAAACAAGAAACGGAACGCAGTTCTTACGGCGGGTCAAGTTTCCAGTTGAATTCTGGATTCCATTTCGCGATCTTCGATAACGACAGAAGATTCAGAGTTCAATCATCTATGGAGGCTGATTCGTGGAATGCTCACTTTCAGCTTTCATCTTCGCGACGCTACCGATCTCGGTCCGGTGTGTACCAAGGAGATCATGAAGAGATTGAAGATGAAAATTCGAGGGCTGAGTTTTTGTGCCCTTTTTGCGCCGAGGATTTTGATATTGTAGGTCTTTATTGTCACGTCGACGAGGAGCACCAGGTGGAAGTCAAGAACGCGGTATGTCCATTATGCATAAAGAAGGTCGGAATGGATATTGTTGGCCACATCATCTCACAACATGGGAGCCTTTTCAAGGTGCAGCGACAGAGGAGATTGCGAAAATTTGGATCTAGTTTGACATTTTCGAAGCTGAGAAAGGAGCTTAGGGAAGGAAACTTGAGATCCCTTCTTGGTGGTTCTTTACACTCTACCCCCACCAGTACTGAACCTGATCCGTTGTTGTTTTCGTTTACTTCTAATCTGCCTACCGTCAGTCAGCCAGCTAAAGTGCAGTCTCAGCTGTCGGCTGAAGTAACTTCATCACAGGAAAGTTCCAAGGCTGACTGTTCAGAGAGGAGCAACGTCTCAAGGCTGAGGGCTTCAAATAAGGATGAAAAGGAGAAGGCTCAGAAATGTGAGTTTGTACAAGGGCTGTTGATGTCTACTATGCTTGATGAGTTATGA 780 45.77 MGESHKQETERSSYGGSSFQLNSGFHFAIFDNDRRFRVQSSMEADSWNAHFQLSSSRRYRSRSGVYQGDHEEIEDENSRAEFLCPFCAEDFDIVGLYCHVDEEHQVEVKNAVCPLCIKKVGMDIVGHIISQHGSLFKVQRQRRLRKFGSSLTFSKLRKELREGNLRSLLGGSLHSTPTSTEPDPLLFSFTSNLPTVSQPAKVQSQLSAEVTSSQESSKADCSERSNVSRLRASNKDEKEKAQKCEFVQGLLMSTMLDEL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7645587 7649314 - CmaCh08G012520.1 Cma08g01252 299947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01252 259 Pfam Stress-induced protein Di19, C-terminal 154 255 IPR027935 -
Cma08g01252 259 MobiDBLite consensus disorder prediction 222 238 - -
Cma08g01252 259 PANTHER PROTEIN DEHYDRATION-INDUCED 19 HOMOLOG 4 42 259 - -
Cma08g01252 259 MobiDBLite consensus disorder prediction 209 238 - -
Cma08g01252 259 PANTHER PROTEIN DEHYDRATION-INDUCED 19 42 259 IPR033347 -
Cma08g01252 259 Pfam Drought induced 19 protein (Di19), zinc-binding 81 133 IPR008598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01252 - - - bhj:120068362 372.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01252 Cma17g00350 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01252 Cma-Chr8:7645587 Cma10g01143 Cma-Chr10:8068224 1.22E-44 dispersed
Cma11g01240 Cma-Chr11:8182736 Cma08g01252 Cma-Chr8:7645587 1.02E-60 transposed
Cma17g00350 Cma-Chr17:1909746 Cma08g01252 Cma-Chr8:7645587 5.03E-104 wgd
Cma08g00445 Cma-Chr8:2506261 Cma08g01252 Cma-Chr8:7645587 2.56E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g114 . . . . . . . . Cmo08g01223 Cmo17g00338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma08g01252 Cma17g00350 Car08g01125 Car17g00321 Cpe12g00299 Cpe17g00046 Bhi12g01897 . . . . . Lcy12g0775 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010705 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01252 Cma_Chr08 FPKM 56.200176 69.773026 29.20657 24.977667 25.126257 25.401459 25.157167 42.535645 44.618519 44.742546