Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01254 ATGGATCTAAGCCACATGAAGGGATCGATGCCGACGCCGACTTCAATGGTTTCTGATCAGTTCCCGGCGGGTCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGTAATCGGGCTGAGATCGCATTATCCATGCTTCGTGAGAACAAAAACGGGTTTGATATTGTGTTAAGTGACGTGCATATGCCAGACATGAATGGATTCAAACTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCCGTTATCATGATGTCAGCAGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGAATTGAAGCGCTTAGGAACATATGGCAACATGTAGTTCGGAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGATGATGGCGATCGAGAGAAAAATCCATCTGAAGGTGCTAACTATTCATCTTCAGTATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATACAGAAGAAGAGGCCGAGGAGAGGGACGATACGTCGACTTTAAAGAAGCCTAGGGTGGTATGGTCGGTTGAGCTCCATCAACAGTTTGTCGCCGCAGTTAAACAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTACTCGAGAAAATGTTGCCAGTCACCTCCAGAAATATCGGTTATATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACTCCAATGTAATTTGAACAATTCTTTTATGAACCCCCAAGATCCGCCTTTTGGGCCAATGGCTTCATTCAATGGAATTGATCTTCAGACACTTTCGGTCACTGGCCATCTCTCGCCTCAAAGCCTTGCTGCACTCCAAGCAACCGAATTTCGAAGGCCTGCTGCAGCGAAATCTAGCATGTCGATGGCCCTTGTTGATCAGAACAACCTATTCAGCTTTAAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACGCCACACCTAAGCAACCGTAAACCAATAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCCTGCCATTATGCACCCTTCTGTGCAGACTCAAGGGAACATAAACATGCCACTCAATATCAAGACAGAACATGGTGCAACTCAACTAATGCATCATTTGTCCCATCAGCAAACTGGAGGACAGGCTGTAAGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCGTCTTTTCCGATCATATCAGGTAGCATTACGAGTCGAAATGGGACTGCTGATAGTACCCAAGGACCTGGATATAACCTAGTTTCGCCAGCATCCTTGATGATGAACTTTCCAATGAACCAACTCACAGAATTGTCAAACAATTTTTCTCTTCCGAGTGATTCGACCGTATCTACCCTAACCTGTAAAGGGGTGTTTCAAGAGGAAATTAGTTCAGATCTACATGGGTCGGACGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCATCTGCAAAAATCCCATGACTGGGATTCTCACAATGTAGGCAGCTTGGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCTTCAACTTTGATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCATAATTCATCCTCTGCTGGAAAGACTATCTTTCCCTTTTCGGATGCAACTCAACCCGAGAATGCGCAGAGTAATGCTGAGAAGTTGCCTCTCGATCCCGGGGACGTTAAACCTCAGAGAATCCCTGATGCAAGCTATCAAACAGACCTCTTATCTGAGAATTTTGGCCAGGATGAACTTCTCAGTGTCTTCCTCAAACAAGAACAACAAGGAGACAACGGATCGCTCCAAATACACTTTGTTGTTGTAACTCTTAAGATCAAAGTTCTCCCGTATTAG 2007 44.64 MDLSHMKGSMPTPTSMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMNGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREKNPSEGANYSSSVYEGSWNSSKRRRDTEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVKQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSLQCNLNNSFMNPQDPPFGPMASFNGIDLQTLSVTGHLSPQSLAALQATEFRRPAAAKSSMSMALVDQNNLFSFKNPKLRFVEDQTPHLSNRKPINLFHGIPTKMEPKQPAIMHPSVQTQGNINMPLNIKTEHGATQLMHHLSHQQTGGQAVSNSPASHLPRISSSFPIISGSITSRNGTADSTQGPGYNLVSPASLMMNFPMNQLTELSNNFSLPSDSTVSTLTCKGVFQEEISSDLHGSDGLMSSYDVFSDLHLQKSHDWDSHNVGSLAFGTSHHGNFIQDSFDVSPSTLIHHGFPSSQTNGQNHNSSSAGKTIFPFSDATQPENAQSNAEKLPLDPGDVKPQRIPDASYQTDLLSENFGQDELLSVFLKQEQQGDNGSLQIHFVVVTLKIKVLPY 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7655266 7658481 + CmaCh08G012540.1 Cma08g01254 299949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01254 668 CDD REC_typeB_ARR-like 27 141 - -
Cma08g01254 668 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Cma08g01254 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 638 - -
Cma08g01254 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 261 IPR017930 -
Cma08g01254 668 SUPERFAMILY CheY-like 24 148 IPR011006 -
Cma08g01254 668 Gene3D - 25 157 - -
Cma08g01254 668 Pfam Response regulator receiver domain 27 135 IPR001789 GO:0000160
Cma08g01254 668 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Cma08g01254 668 MobiDBLite consensus disorder prediction 565 601 - -
Cma08g01254 668 MobiDBLite consensus disorder prediction 167 181 - -
Cma08g01254 668 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Cma08g01254 668 MobiDBLite consensus disorder prediction 148 202 - -
Cma08g01254 668 MobiDBLite consensus disorder prediction 182 202 - -
Cma08g01254 668 SMART REC_2 25 137 IPR001789 GO:0000160
Cma08g01254 668 Gene3D - 202 264 - -
Cma08g01254 668 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Cma08g01254 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 638 IPR045279 GO:0009736
Cma08g01254 668 MobiDBLite consensus disorder prediction 565 617 - -
Cma08g01254 668 MobiDBLite consensus disorder prediction 148 166 - -
Cma08g01254 668 PIRSF RR_ARR_type-B 4 655 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01548 Cma08g01254 CCT
Cma06g01548 Cma08g01254 ECH
Cma08g01254 Cma17g00351 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01254 Cma-Chr8:7655266 Cma09g00420 Cma-Chr9:1816748 5.50E-102 dispersed
Cma16g00149 Cma-Chr16:660996 Cma08g01254 Cma-Chr8:7655266 5.56E-54 dispersed
Cma14g01602 Cma-Chr14:12043159 Cma08g01254 Cma-Chr8:7655266 0 wgd
Cma17g00351 Cma-Chr17:1926092 Cma08g01254 Cma-Chr8:7655266 0 wgd
Cma06g01548 Cma-Chr6:9701157 Cma08g01254 Cma-Chr8:7655266 0 wgd
Cma08g00447 Cma-Chr8:2518826 Cma08g01254 Cma-Chr8:7655266 7.18E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35566 PF00072 Response_reg 1.10E-21 CL0304 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01254 - K14491 csv:101210138 1053.89