Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01256 ATGTCGTTGAGACCGACTGCAAGAACCGAGGTTCGTCGGAACCGTTATAAGGTCTCTGTTGATGCTGAAGAGGGCCGTCGCCGGCGAGAAGATAATATGGTGGAGATCAGGAAGAGTAAACGCGAAGAGAGCCTTCAGAAGAAGCGTAGGGAAGGCCTTCAAGCACAGCAGTTTCCTTCTGCTGTCCACACTTCCACTGTCGAGAAGAAGTTAGAGAGCCTTCCGTCTATGGTTGCGGGGGTCTGGTCTGATAATAGTAATCTTCAGCTGGAGGCAACAACTCAGTTTCGGAAATTACTTTCGATTGAACGAAGCCCTCCCATTGAGGAAGTGATTCAATCTGGAGTTGTTCCTCGTTTTGTAGAATTTCTTGTGAGGGAGGATTTCCCTCAACTTCAGTTTGAAGCTGCTTGGGCTCTCACGAACATAGCGTCTGGAACCTCGGAGCACACAAAGGTGGTTATTGATCATGGTGCAGTTCCCATTTTTGTTAAGTTACTCGTGTCTCCTAGTGATGATGTTCGAGAGCAGGCTGTGTGGGCTTTGGGCAATGTTGCTGGAGATTCACCTACATGCCGTGATCTTGTCCTTCGCCATGGAGCTTTGGTTCCACTTCTTTCACAGCTGAATGAGCATGCTAAGCTTTCCATGTTGCGAAATGCTACTTGGACACTTTCGAACTTTTGTCGGGGCAAGCCACAACCTCCATTTGATCAGGTAAAGCCAGCTCTTCCTGCACTTGAGCGCCTAGTTCACTCGAATGACGAAGAAGTTCTGACAGATGCCTGCTGGGCTCTCTCTTATCTTTCTGATGGCACAAACGATAAAATCCAAGCCGTGATTGAGGCAGGGGTGTGCGGGCGACTTGTACAGCTCCTATTACATCCTTCATCATCAGTTCTCATTCCTGCTCTTCGGACGGTTGGGAATATCGTGACCGGAGATGACCTTCAAACTCAGTGTATCATTAGTGATGGTGCGCTTCCATGCCTTCTGAGCTTAATGACTCACAATCATAAAAAGAGTATCAAGAAAGAGGCTTGCTGGACAATATCTAACATTACTGCTGGAAACAAGGAACAAATCCAGGCTGTCATTGATGCTGAGTTAATACCTCCGCTAGTGAATTTGCTTCAAACTGCTGAGTTTGACATAAAAAAAGAGGCTGCATGGGCAATTTCAAATGCAACATCTGGTGGTGCTCATGATCAAATTAAGTACCTTGTCACTGAAGGCTGCATCAAACCATTATGTGATCTTCTTGTATGCCCAGATCCTAGGATTGTTACGGTTTGTTTAGAAGGGTTAGAGAACATTTTGAAGGTCGGAGAAGCCGAAAAGAATTTGGGTGCCAGTGGAGACGTTAATCTATATGCGCAGATGATCGATGATGCTGAGGGTTTAGAAAAGATTGAAAATCTCCAGAGTCATGACAACCATGAGATCTATGAAAAGGCTGTCAAAATTCTCGAGACATATTGGTTGGAGGAAGAGGATGAGGCCTTGGCCGCTACTGATGGTGAGGCTCAACCTGGCTTCCGCTTCGGTGGAAACGCTCTTCCAGTTCCTTCTGGTGGATTCAACTTTAGTTGA 1593 46.39 MSLRPTARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPSAVHTSTVEKKLESLPSMVAGVWSDNSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLVSPSDDVREQAVWALGNVAGDSPTCRDLVLRHGALVPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSSSVLIPALRTVGNIVTGDDLQTQCIISDGALPCLLSLMTHNHKKSIKKEACWTISNITAGNKEQIQAVIDAELIPPLVNLLQTAEFDIKKEAAWAISNATSGGAHDQIKYLVTEGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGASGDVNLYAQMIDDAEGLEKIENLQSHDNHEIYEKAVKILETYWLEEEDEALAATDGEAQPGFRFGGNALPVPSGGFNFS 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7660164 7663519 + CmaCh08G012560.1 Cma08g01256 299951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01256 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Cma08g01256 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Cma08g01256 530 SUPERFAMILY ARM repeat 13 499 IPR016024 -
Cma08g01256 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 104 145 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 189 230 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 315 356 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 401 441 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 232 271 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 358 398 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 273 313 IPR000225 GO:0005515
Cma08g01256 530 SMART arm_5 147 187 IPR000225 GO:0005515
Cma08g01256 530 Pfam Atypical Arm repeat 456 503 IPR032413 -
Cma08g01256 530 Gene3D - 72 495 IPR011989 -
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 403 439 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 192 230 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 358 397 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 148 186 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Cma08g01256 530 Pfam Armadillo/beta-catenin-like repeat 316 356 IPR000225 GO:0005515
Cma08g01256 530 Gene3D - 11 50 IPR036975 GO:0006606
Cma08g01256 530 PANTHER IMPORTIN ALPHA 2 519 - -
Cma08g01256 530 MobiDBLite consensus disorder prediction 8 50 - -
Cma08g01256 530 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Cma08g01256 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Cma08g01256 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 361 IPR000225 GO:0005515
Cma08g01256 530 PANTHER IMPORTIN SUBUNIT ALPHA 2 519 - -
Cma08g01256 530 MobiDBLite consensus disorder prediction 1 59 - -
Cma08g01256 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 397 IPR000225 GO:0005515
Cma08g01256 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01256 K15042 KPNA5_6; importin subunit alpha-6/7 - csv:101209891 1005.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01085 Cma-Chr5:8569309 Cma08g01256 Cma-Chr8:7660164 0 dispersed
Cma08g01256 Cma-Chr8:7660164 Cma12g01043 Cma-Chr12:8270271 0 dispersed
Cma17g00352 Cma-Chr17:1933144 Cma08g01256 Cma-Chr8:7660164 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01256 Cma_Chr08 FPKM 48.345512 62.088398 37.252445 40.958057 39.929153 36.416637 40.629513 53.663422 50.646408 46.795368