Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01259 ATGGGAGTTGAGAAAGACGGTTGGAAAAATGGAGGAAGTTATGGTGGTGGATTTTTCCACTTGTTTGATTGGACTGCTAAATCTCGAAAGAGATTGTTCTCCAGCAAACCGGATGTTCAAGAGCGTTCTAAACAAGGGAATAGAAGTGCTGGAAACTCGCCCTTGACACAGGCTCATCTGATAGGTTTGGATGAATGTGGGACAGGGCGAAGTATTAAAGGAAGCAGTGATTATAGTTGTTCTTCATCTGTGACGGAGGATGAAGGATGCGGAGTTAAGGTCCCTGGGGTAGTTGCTAGGCTTATGGGATTGGATTCCTTACCTTCATCCCATTTTTCAGATACCTACTTTACCCCATCATTTGATACTCAATCTCTTCAAGAAGCTCCCAGCGATAGGGGAAGTTTCAATTACCGTCATGACTGCCCAATCATGTTCTCTGGTAATTTGCTTGATCAGGTTGATGACCGTGCAGCTGCTCCTAGGAAACCTTCAGAAACAAAGCCTCAGAAGATTCTTAGCAGGCCGATAGAAAAGTTCCAAACAGAAATTCTTCCTCCTAAATCAGCCAAATCAATTCCAATTACTCACCATAAGCTTCTGTCCCCTATTAAGAGTCCCGCTTTCATTCCGACTAAGAATGCTGCTCACATAATGGAAGCTGCTGCAAGAATAATAGATTCTGTACCTCCAGCTACTACCAAAAGTAAAATTTCATCGATTGGATCTTCTTCAGCAGCACCCTTGAAGTTGCAAGCTCCAAAAGAAAAAATAGATATATCACAAAAAATGCCTCTAGTTAGGTCCTCTTCAGTTAGCTTGAAGGCCAAAGAATTAAAAGAGAAAGCAGAGTCCTCTCATAAATCAGCCAGGTTTCTTGAAACTTCTAGAAAGCCTTTGGAATCAAATGCCTCCAGGCTTTTGAAGGGACAGTCTATGAACAAAAGCTGGGATGGATCTCAAGATTCATCATCATTCAAGGTTTTGCCTGATGCGGAATATAGTTCCAAGAACAAAGGAAAATCCATATCACTTGCAATACAAGCAAAAGTTAATGTACAAAGAAGAGAAAATGTGAATACCCATAGCCATAGAAATTTTACTGGCCAGAAACAACAGACTGAGGGGAAGTCAAGCCAGCCCTTAAAGACACAGACAAGCTCTCAGAAAAATCTGCACTTACAATCCTCTGTCTGCAATGCTTCTAATAACCATCCTCTCAAGCAGAATAACCAGAGACAAAACTGCCATGTTGACAGGGTAAAATTACCATCAAAGAAACCAATTTCCAACACTGAGGGAAAGAAATCACTTAATGAAAATTTTTCTTTTAGACATCGAAGAAATGCAGGAAGAGTTGTCGTCGGTTCAAAAGCTGGTGCCAGGAAGACAGGCTTGGAAATATCCGACAGGGAAAAGGTAGACTTGCATTCTAATGCAAAAAATCTTCCTAGGAAGAAACGGTCAATCGACAGGGATCAACGCTTTGATAAGAAACAAACCAGGGATGATATGTTAACTGACAAAATCCAGATGTCAATTCATTCAAATTCAAACAATATTGCCGACAGTTCTTCTAGTAGTACGGCTCAAGATTGCAGAAAAAAGGGGACAGACATTGTTTCTTTTACATTTACTGCCCCACTTACAAGAAAGGTGCCTGGATCTGATACCTATGGTCACATTGAATCAAAACTTAGAGGGCCGCATGGATCAGATAGTTTGAAGTCATCCTCAATAGAGTGCAATATAATTGGAGAAAATGCCTTGAGTACACTTTTAGAGCAGAAGTTAAGAGAACTAATTGATATGGTTGAGTCCTCCCCTAGCGTCGAATCTATCACTGGAGGATCTGAGAGTTCTTGTTTATCGACTTCTGATCATCTTTCACCCTCTCTTGATACGCTCGATACGGTGTCCACAAAGTTGAATGAGAGGATCCAACAGAGTTCGGTTTGCAGCAAGCAATCTGGTCTATATAGTTTTGATTATTCTTCTACTGATTCTTCGATACAAGGATTAAAGCATGAATTCCCGTTAGTTCATAGGATTGAAGAATGTAGCAGTAATAGTATTGATGCTGATGCTGAGCAGTTGCTCAAAGTTCGACATCCGAGTCCCGTCTCCATTCTTGAACATTCGTTTTCATCTGAAAGCTGTGACTCATCAGATAGTAACAGCAGAGAAGGAAACAAGTTTTGTTCATCAATCCAAGGCCAAGATGTTATTGAAGCTGATACAGAGTTGCTTGATTCTGCATCCTCCTTAACGAACGAAGCTCCAACAAGTAAGTTCAGTTCATCGATCTCGAAATGTACTACAGGACGTACCGTGTGGGAACTAGAATACATAAAGGACATACTCTGTGATGTGGAGTTGATGTTCAACGACTATGTATTGGGACGCTCCCATGAAGTCATAAACCCTTATCTATTCAATATATTAGAGAATCAAAACAAAGGATCGGAGCAAAGGGTTAGACGGAAGGCATTATTTGATTGCGTTTGTGAATGTTTGGACTTGAGATGTAGACAGTACGTAGGCGGAGGGTATAAAATGTGGGGAAAAGGATTGGGAGTATTGAGAAGAAAGGAACAGTTAAGCAAAGAGATTTGGAAGGAGATTTCAGAGTGGAGCGGAATGGGGGATTGCATGGTGGATGAATTAGTTGACAACGACATGAGTTGCTGGCATGGAAGATGGTTGGACTTTGAAGTTGACGACGCTTTAACAATCGGAGTCGATCTCGAATCCCAAATTCTTGATTCTTTAGTTGAAGAAGTGCTTGGTGATATCGCCATTCCTTAA 2808 41.03 MGVEKDGWKNGGSYGGGFFHLFDWTAKSRKRLFSSKPDVQERSKQGNRSAGNSPLTQAHLIGLDECGTGRSIKGSSDYSCSSSVTEDEGCGVKVPGVVARLMGLDSLPSSHFSDTYFTPSFDTQSLQEAPSDRGSFNYRHDCPIMFSGNLLDQVDDRAAAPRKPSETKPQKILSRPIEKFQTEILPPKSAKSIPITHHKLLSPIKSPAFIPTKNAAHIMEAAARIIDSVPPATTKSKISSIGSSSAAPLKLQAPKEKIDISQKMPLVRSSSVSLKAKELKEKAESSHKSARFLETSRKPLESNASRLLKGQSMNKSWDGSQDSSSFKVLPDAEYSSKNKGKSISLAIQAKVNVQRRENVNTHSHRNFTGQKQQTEGKSSQPLKTQTSSQKNLHLQSSVCNASNNHPLKQNNQRQNCHVDRVKLPSKKPISNTEGKKSLNENFSFRHRRNAGRVVVGSKAGARKTGLEISDREKVDLHSNAKNLPRKKRSIDRDQRFDKKQTRDDMLTDKIQMSIHSNSNNIADSSSSSTAQDCRKKGTDIVSFTFTAPLTRKVPGSDTYGHIESKLRGPHGSDSLKSSSIECNIIGENALSTLLEQKLRELIDMVESSPSVESITGGSESSCLSTSDHLSPSLDTLDTVSTKLNERIQQSSVCSKQSGLYSFDYSSTDSSIQGLKHEFPLVHRIEECSSNSIDADAEQLLKVRHPSPVSILEHSFSSESCDSSDSNSREGNKFCSSIQGQDVIEADTELLDSASSLTNEAPTSKFSSSISKCTTGRTVWELEYIKDILCDVELMFNDYVLGRSHEVINPYLFNILENQNKGSEQRVRRKALFDCVCECLDLRCRQYVGGGYKMWGKGLGVLRRKEQLSKEIWKEISEWSGMGDCMVDELVDNDMSCWHGRWLDFEVDDALTIGVDLESQILDSLVEEVLGDIAIP 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7673711 7678149 + CmaCh08G012590.1 Cma08g01259 299954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01259 935 Pfam Domain of unknown function (DUF4378) 780 927 IPR025486 -
Cma08g01259 935 PANTHER EXPRESSED PROTEIN 1 263 - -
Cma08g01259 935 PANTHER EXPRESSED PROTEIN 261 932 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 554 574 - -
Cma08g01259 935 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 261 932 - -
Cma08g01259 935 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 263 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 34 55 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 477 504 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 713 733 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 281 295 - -
Cma08g01259 935 Pfam DUF761-associated sequence motif 82 113 IPR032795 -
Cma08g01259 935 MobiDBLite consensus disorder prediction 361 444 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 609 629 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 281 305 - -
Cma08g01259 935 MobiDBLite consensus disorder prediction 363 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01259 - - - csv:101212589 1377.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01259 Cma17g00355 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00405 Cma-Chr1:2050599 Cma08g01259 Cma-Chr8:7673711 1.19E-10 dispersed
Cma05g01083 Cma-Chr5:8545277 Cma08g01259 Cma-Chr8:7673711 4.08E-86 dispersed
Cma08g01259 Cma-Chr8:7673711 Cma12g01040 Cma-Chr12:8247535 3.46E-66 dispersed
Cma08g01259 Cma-Chr8:7673711 Cma17g00355 Cma-Chr17:1951074 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g105 Blo01g00057 . Bda03g01163 Bda08g00308 Bpe04g01107 . Bma04g01138 Bma05g01020 Cmo08g01229 Cmo17g00345 . . . . . . . . . . . . . . Cla06g00443 Cam06g0471 Cec06g0476 Cco06g0474 Clacu06g0457 Cmu06g0458 Cre06g1233 . . Cone7ag0113 Cone4ag0117 . Csa06g01760 Chy11g01551 . . . . . Bpe05g00820 . . . . . . Cma08g01259 Cma17g00355 Car08g01130 Car17g00327 Cpe12g00305 Cpe17g00051 Bhi12g01905 . . . . . . . . . . . . . Lsi09g01471 . . Cme11g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004358 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01259 Cma_Chr08 FPKM 3.792836 5.305291 3.699492 4.014661 15.068601 14.821261 16.347591 0.517889 0.363261 0.598825