Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01262 ATGAAGATCAACATCGATAGGGAGGCGCGGAAAGTTGGGGTTGATAATCGAATTCCCCTCCGGAATTACTATCGGATCGCCGATAATCTCTTAAAACAGGCTAATATTTATCGGGAGGAGAATAATATTGTGGATTTGTTCATTATACTTCTTAGGTTTTCAAGCTTGGTTTCTGAAACTATACCACGGCATCGTGATTACCTAGCTTTTTTCCCAAAGGAAAAGATATTTTATAAGAAGAAACTGTTGAGTGTAGTAGATGAACTTGAGTCCTTGAAGCCCGAATTTGATCGCCGAGTAAATGAACTGGAGAAAGTGTATGGACGGTCTCGTCTTCCTTCACCTGACGAGCAGGAAATAGTTTCAAACAGTCGACGGCCATCGCCCTATGTGAATGGAAAATTTTCATTAATCTTGGATCAAAAGCAGCATGCCAATTTACAACCACAATCTTCATTGAGGTATCATGACGACCGAGGTCTAGTTTCACAATCAAGTTCTGTAAGGATTGAGAATAAGTTCTCAAATCTGTCTATCAATGTATCGCTTCCCAAACCCGAAACTTTGTCTAGACATTCTATTTTGGGTCCCAATGGTCTTCAGGGCCAATGGAAGGGACCGAGTACAGACAAGATTCTCTATCCAAGAAATCAGGATTATACTTCTGAAGATTCAAGACTGAATCAAATTGAACAATGTGATCTAGTGGCACAAAAAGATGGTGGTCCAGGAGGTGTTACGTCGATGATGGACTCGGTACTCTCGCTAGACGATGGCCTTTGGCCTCATCCTGCAGACATGTCTACTCCTCCATTGATAACAGAAGTAAGGGAAGATCCTTTCACATTGGTCAAACAACCTTCTCCTCCTCCTGTTCTTGCTAAGGTTCAGCAGGAATATGCGACGATCCCCCCATCTAAAGTTGCGGATCCAAGGCCTGGAGTGGCAAAACAATCACAGGATGGATCTGAGTTTCAACATTTACACATTCCAGTAAAAATGCTGGATGATTTCTTGAGATTGGCCCGAGAAAATACAAATAAGAATCTGGAGACTTGTGGTGTTTTAGCTGGCTCACTGAAAAACAGGGTTTTTTACATATCTACGCTCATAGTCCCGAAGCAAGAATCAACATCAGATTCCTGCCAAACGTTGAATGAGGAGGAAATATTTGAAGTTCAAGACAGATTATCACTTTTCCCTCTTGGTTGGATCCATACACACCCATCACAAACCTGTTTCATGTCATCTGTGGATTTGCACACACATTACTCGTACCAGATTATGCTACCAGAAGCTATTGCAATCGTGATGGCTCCTACGGATGAATCAAGTCCATATGGAATATTTCATCTGTCCGACCCAGGTGGTGTGTCGGTCATCCGCAACTGCCAACAGCGCGGATTTCATCCCCATGAGGAGCCTGAAGATGGGAGTCCACTCTATGAGCACTGCTCTCATGTTTTGATGAATCCCAACTCGAAGTTTGACGTTATCGATCTAAGGTAA 1509 42.74 MKINIDREARKVGVDNRIPLRNYYRIADNLLKQANIYREENNIVDLFIILLRFSSLVSETIPRHRDYLAFFPKEKIFYKKKLLSVVDELESLKPEFDRRVNELEKVYGRSRLPSPDEQEIVSNSRRPSPYVNGKFSLILDQKQHANLQPQSSLRYHDDRGLVSQSSSVRIENKFSNLSINVSLPKPETLSRHSILGPNGLQGQWKGPSTDKILYPRNQDYTSEDSRLNQIEQCDLVAQKDGGPGGVTSMMDSVLSLDDGLWPHPADMSTPPLITEVREDPFTLVKQPSPPPVLAKVQQEYATIPPSKVADPRPGVAKQSQDGSEFQHLHIPVKMLDDFLRLARENTNKNLETCGVLAGSLKNRVFYISTLIVPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDESSPYGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVLMNPNSKFDVIDLR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7683178 7687867 - CmaCh08G012620.1 Cma08g01262 299957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01262 502 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 324 431 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma08g01262 502 SMART pad1_6 327 455 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma08g01262 502 PANTHER AMSH-LIKE PROTEASE 2 502 - -
Cma08g01262 502 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 2 502 - -
Cma08g01262 502 Gene3D - 3 122 - -
Cma08g01262 502 SUPERFAMILY JAB1/MPN domain 327 458 - -
Cma08g01262 502 Coils Coil 86 106 - -
Cma08g01262 502 CDD MPN_AMSH_like 326 502 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cma08g01262 502 Gene3D Cytidine Deaminase, domain 2 311 502 - -
Cma08g01262 502 Pfam USP8 dimerisation domain 9 99 IPR015063 -
Cma08g01262 502 ProSiteProfiles MPN domain profile. 328 458 IPR037518 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01262 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - csv:101209152 910.212
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01262 Cma17g00357 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00011 Cma-Chr5:44166 Cma08g01262 Cma-Chr8:7683178 1.15E-82 dispersed
Cma08g01262 Cma-Chr8:7683178 Cma18g00045 Cma-Chr18:181474 1.81E-161 dispersed
Cma17g00357 Cma-Chr17:1965201 Cma08g01262 Cma-Chr8:7683178 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008620 2 1 1 1 1 1 2 0 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01262 Cma_Chr08 FPKM 7.664306 9.160109 8.613945 7.569365 4.966677 5.520701 6.045597 20.962454 22.216749 23.347446