Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01263 ATGAAAAGCTCAGAATTTGTATCTATGTTTTGTTCTTCCCAAACATCGACTATGGCTCTCGTGTTCTTTCCTTTCACTAGAATATCCATTTCAGCTGTTGCCGTCTTCTACCTTCTCACTTCTTGTTATTTGTACGGAAAAGGAGACGACGCCGAGGGTGTTGCATCGAGCGGTTTTGTTGGTTACGAGGATCCACCCGAGATTGTTGCCAAAGCATTACGATGCTTCAATGATAAATATATATACAGCGCGTGTGAAGAATCGTACAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAGAACAGAAGAATACTGCAACGGGCCGTGTTTGGGTGAAACGCACTTGGTGCTTGATTGCATTGACGGCATTTTTAGCAATTTTTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCGACGTGTTGGAGCACATAAGAGCTGAAACAGACAAAGCGTGGAGGGCTTCGAATAAGATAGTTATTGGATTTAGCTTTATTATTTTGGGCGTTTTTAGCTTGTTCCTTTGA 585 43.42 MKSSEFVSMFCSSQTSTMALVFFPFTRISISAVAVFYLLTSCYLYGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLERTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKIVIGFSFIILGVFSLFL 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7688155 7689678 - CmaCh08G012630.1 Cma08g01263 299958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01263 194 PANTHER OS07G0289901 PROTEIN 18 180 - -
Cma08g01263 194 PANTHER OS07G0289901 PROTEIN-RELATED 18 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01263 - - - csv:101212342 269.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01263 Cma-Chr8:7688155 Cma11g01233 Cma-Chr11:8084466 7.69E-35 dispersed
Cma08g01263 Cma-Chr8:7688155 Cma02g00679 Cma-Chr2:4167616 6.57E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g101 . . . . . . . . Cmo08g01233 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01756 Chy11g01554 . . Blo07g00157 . . . . . Bma06g01479 Sed04g4010 . . Cma08g01263 . Car08g01133 . . Cpe17g00054 Bhi12g01908 Tan06g2736 Cmetu11g1056 . . . . . . . . . . . Lsi09g01473 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003120 0 2 0 2 1 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 2 2 2 2 2 1 1 2 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01263 Cma_Chr08 FPKM 9.423021 6.505529 0.0 0.251051 0.0 0.0 0.0 0.0 0.289572 0.0