Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01264 ATGAATCGGTTTAATTTCTTCATCCTTTTCGTTAACTACGGCGGCGTTTTTTCTCTTGTTGTTGTTAGGAAGTTAGATATGGCGGATCATCAAAGCAAAGGAGGAGAAAATTACTTCCCCTTCCACCAAAACCAGGAAGCTACAGCAGTAACTGGGAACAGATACGGAGGACTTGCTCCAAAGAAGAAGCCATTGATTTCAAAGGACCACGAACGTGCCTTCTTTGATTCGGCGGATTGGGCCTTATGCAAGCAAGGGGCAGGGCTTTGTAACAGCGTGGCCGTAGAGAAACTACAGCCTAAGCTACAGAGGACCCCAAAGCCACAGCTTCCACCAAGGAGGCCGGTCTGCACGTTCGAGAAGGGCAATATCGTTGAATAG 381 47.77 MNRFNFFILFVNYGGVFSLVVVRKLDMADHQSKGGENYFPFHQNQEATAVTGNRYGGLAPKKKPLISKDHERAFFDSADWALCKQGAGLCNSVAVEKLQPKLQRTPKPQLPPRRPVCTFEKGNIVE 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7690426 7693181 - CmaCh08G012640.1 Cma08g01264 299959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01264 126 Pfam cAMP-regulated phosphoprotein/endosulfine conserved region 52 116 IPR006760 -
Cma08g01264 126 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 19-RELATED PROTEIN 42 122 - -
Cma08g01264 126 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 19-RELATED PROTEIN 42 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01264 - - - csv:101208744 179.104
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01264 Cma14g01599 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01670 Cma-Chr4:8400601 Cma08g01264 Cma-Chr8:7690426 1.54E-20 dispersed
Cma08g01264 Cma-Chr8:7690426 Cma14g01599 Cma-Chr14:12018287 1.32E-28 dispersed
Cma08g01264 Cma-Chr8:7690426 Cma17g00357 Cma-Chr17:1965201 1.75E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g97 . . . . . Bpe14g01105 . . Cmo08g01234 . . Cma14g01599 . Car14g01412 Sed09g0273 . Cpe03g01338 Bhi01g01070 Tan10g1062 Cmetu06g2308 Lac11g0917 . . . . . . . . . . . . Cone7ag0110 . . . . . . . . . . . . . . . Cmo14g01630 Cma08g01264 . Car08g01134 . . Cpe17g00055 Bhi12g01910 . . . . . . . . . . . . . . Csa03g01506 Chy06g00743 Cme11g02066
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003768 0 4 0 0 1 1 3 2 2 1 1 1 2 2 2 2 2 1 2 1 2 2 2 1 0 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01264 Cma_Chr08 FPKM 22.445295 19.892057 0.0 1.835725 13.288119 15.990948 11.219718 5.671487 6.205317 4.950397