Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01266 ATGTCTCTCGCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGTTTCCATACATTGCAAGAATTGGATGTTACAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATTCATGCAATTCTGTGTAACAACAAATATTTTGTCATCCACGTCAAGCCAGTGAACTTGCCTACAAGTGGAACCATTGTACTATTTAACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACCATAAAAGAAGCACACGAACACCTAAAAGTTGGGAATGTAGAGAGGATACATGTATACTATGCCCATGGCCTAGATAACACAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTTGTTCATTACCGTGAAACACAAGAGGTTAATTTCAGCACAATGCATCTGCAGAGCTCTCCATCCATGTCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCAACTCCTTGCCTTTTATCGGAAGAACTTGATTCTAGGGATAATCATGGTTATTCCGTTGACGAAAATGAACTTTCAGAGCCAAGAGACACTACAACAGCCATGAATCATGAACAACGACTTCATGAGATCAACACGCTTGAGTGGGATGAACTTCTTGTGACAGACGAGCCTTTCAAGCCTTCCATGCCTAAAGGAGACAGATTTTCATACTTTGACCAACGGAGCCAAGTCCCAACAAATGTGACCAACAATTTATTGGGGAACACGCCTTTGTTTAATAACCCAGTTGAGTCAATTGGGAGTGCCTATATGCCACTATCGAGTGGTCAAACAAATTTAAATGTGGAGAGTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCTGCAAAGCCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACTGAGTCTCCTGATACAGTCATTGATCCTGCCATTGAGCCATCCATTTCATCCATTCACAATTCTTTTACTGATCCAACATTAAATCACTGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACCGATATCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACCAAGATTCTAATCACGGGATATTTTCACAATGAGTACTTGCATCTGGCAAACTCCAATATATTGGTCGTGTGTGGTAATGCCAGTGTTAATGCTGAATTAATTCAACCTGGAGTTTATCGATGTGTGGTACAACCACATTCAACTGGACTAGTAAATTTATTCGTGAGCTTAGATGGTCATAAACCTATCAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTCACGAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAGAAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTTCCCTGAACGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGACAGTTGGATTTATTTGTTAAACTCAATAAAAGAAAATAACACTCCATTTCCTCAAGCAAGAGACGGTGTTCTTGAGATCATTTTGAAAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTCGATATAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTTCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTCGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTGTCAGTTGGGGCAAAACCAAACTTGGTCACCGATCCCTCATCAAAGAACCCTCTGGGATACATAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTGTCACAGTTTAATGATATGAGTTTGGCTGGAAATGTTCGTGGTTCATTGGAAACTAGTACAATAACGGACGCCACTAACTTGGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTGGCAGCTTACCGAACAGCTGCTGATGCAGCAGCGCGCATACAAACTGCATTCCGTGAGAATTCTTTAAAGCAAAGGACTCGAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTGTTGCAGCCATGAAGATTCAACATGCTTACCGCAACTTTGAATCACGAAAAAGAATGGCAGCTGCAGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGAGTTCCTTAATATGCGTCGTCATGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAATGCGGAGGCAGTATCGCAAGATTTTATGGTCAGTAGGCGTAATCGATAAAGCCATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAATTGGCATAGAAGAGGACTTCTACCACGTGTCCCAAAAACAAGCAGAAGAGCGAGTAGAGAAAGCTGTTGTACGGGTTCAGGCTCTGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGAAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAATTTGAGTAGCTGA 2754 41.79 MSLAMKADVQGSLVGSEIHGFHTLQELDVTNIREEASGRWLRPNEIHAILCNNKYFVIHVKPVNLPTSGTIVLFNRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNVERIHVYYAHGLDNTTFVRRCYWLLDKTLEHIVLVHYRETQEVNFSTMHLQSSPSMSMNSNSGSVSDPSTPCLLSEELDSRDNHGYSVDENELSEPRDTTTAMNHEQRLHEINTLEWDELLVTDEPFKPSMPKGDRFSYFDQRSQVPTNVTNNLLGNTPLFNNPVESIGSAYMPLSSGQTNLNVESKESIPITSLDNLLNDGLLQSQDSFGRWINEVITESPDTVIDPAIEPSISSIHNSFTDPTLNHCQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYLHLANSNILVVCGNASVNAELIQPGVYRCVVQPHSTGLVNLFVSLDGHKPISQVLNFEYRAPLSREPVVASEQIQKWEEFQVQMRLAHLLFSTSRSLSIMSTKLSPTSLNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQARDGVLEIILKSRLREWLIERVAEGSKKSTDFDIKGQGVIHLCAILGYTWAIHLFSWSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYIAADLASMNGYDGLAAYLSEKALVSQFNDMSLAGNVRGSLETSTITDATNLDSISEEQMYMKETLAAYRTAADAAARIQTAFRENSLKQRTRAIEFSTPEDEARGIVAAMKIQHAYRNFESRKRMAAAARIQYRFRTWKIRKEFLNMRRHAIRIQAAFRGFQMRRQYRKILWSVGVIDKAILRWRLKRKGFRGLQVAPAEVTEQQEIGIEEDFYHVSQKQAEERVEKAVVRVQALFRSKKAQEEYRRMKLTYDEAALEYEELSHPDMNLSS 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7703562 7713606 + CmaCh08G012660.1 Cma08g01266 299961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01266 917 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Cma08g01266 917 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Cma08g01266 917 Gene3D Immunoglobulins 362 458 IPR013783 -
Cma08g01266 917 Pfam CG-1 domain 36 148 IPR005559 GO:0003677
Cma08g01266 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 911 - -
Cma08g01266 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 911 - -
Cma08g01266 917 Pfam IPT/TIG domain 369 454 IPR002909 -
Cma08g01266 917 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Cma08g01266 917 ProSiteProfiles IQ motif profile. 770 796 IPR000048 GO:0005515
Cma08g01266 917 SUPERFAMILY Ankyrin repeat 569 667 IPR036770 -
Cma08g01266 917 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cma08g01266 917 Gene3D - 511 668 IPR036770 -
Cma08g01266 917 Pfam Ankyrin repeats (3 copies) 562 634 IPR002110 GO:0005515
Cma08g01266 917 SMART iq_5 870 892 IPR000048 GO:0005515
Cma08g01266 917 SMART iq_5 792 814 IPR000048 GO:0005515
Cma08g01266 917 SMART iq_5 769 791 IPR000048 GO:0005515
Cma08g01266 917 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cma08g01266 917 CDD IPT_PCSR 368 455 - -
Cma08g01266 917 Coils Coil 884 904 - -
Cma08g01266 917 Gene3D - 771 817 - -
Cma08g01266 917 SUPERFAMILY E set domains 368 455 IPR014756 -
Cma08g01266 917 ProSiteProfiles IQ motif profile. 793 817 IPR000048 GO:0005515
Cma08g01266 917 Pfam IQ calmodulin-binding motif 794 814 IPR000048 GO:0005515
Cma08g01266 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 896 IPR027417 -
Cma08g01266 917 SMART ANK_2a 605 634 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01266 Cma14g01565 CCT
Cma08g01266 Cma17g00358 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01266 Cma-Chr8:7703562 Cma14g01565 Cma-Chr14:11743952 9.89E-141 dispersed
Cma17g00358 Cma-Chr17:1984908 Cma08g01266 Cma-Chr8:7703562 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35569 PF12796 Ank_2 1.30E-06 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01266 K21596 - csv:101211298 1429.46