Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01266 ATGTCTCTCGCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGTTTCCATACATTGCAAGAATTGGATGTTACAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATTCATGCAATTCTGTGTAACAACAAATATTTTGTCATCCACGTCAAGCCAGTGAACTTGCCTACAAGTGGAACCATTGTACTATTTAACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACCATAAAAGAAGCACACGAACACCTAAAAGTTGGGAATGTAGAGAGGATACATGTATACTATGCCCATGGCCTAGATAACACAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTTGTTCATTACCGTGAAACACAAGAGGTTAATTTCAGCACAATGCATCTGCAGAGCTCTCCATCCATGTCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCAACTCCTTGCCTTTTATCGGAAGAACTTGATTCTAGGGATAATCATGGTTATTCCGTTGACGAAAATGAACTTTCAGAGCCAAGAGACACTACAACAGCCATGAATCATGAACAACGACTTCATGAGATCAACACGCTTGAGTGGGATGAACTTCTTGTGACAGACGAGCCTTTCAAGCCTTCCATGCCTAAAGGAGACAGATTTTCATACTTTGACCAACGGAGCCAAGTCCCAACAAATGTGACCAACAATTTATTGGGGAACACGCCTTTGTTTAATAACCCAGTTGAGTCAATTGGGAGTGCCTATATGCCACTATCGAGTGGTCAAACAAATTTAAATGTGGAGAGTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCTGCAAAGCCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACTGAGTCTCCTGATACAGTCATTGATCCTGCCATTGAGCCATCCATTTCATCCATTCACAATTCTTTTACTGATCCAACATTAAATCACTGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACCGATATCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACCAAGATTCTAATCACGGGATATTTTCACAATGAGTACTTGCATCTGGCAAACTCCAATATATTGGTCGTGTGTGGTAATGCCAGTGTTAATGCTGAATTAATTCAACCTGGAGTTTATCGATGTGTGGTACAACCACATTCAACTGGACTAGTAAATTTATTCGTGAGCTTAGATGGTCATAAACCTATCAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTCACGAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAGAAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTTCCCTGAACGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGACAGTTGGATTTATTTGTTAAACTCAATAAAAGAAAATAACACTCCATTTCCTCAAGCAAGAGACGGTGTTCTTGAGATCATTTTGAAAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTCGATATAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTTCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTCGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTGTCAGTTGGGGCAAAACCAAACTTGGTCACCGATCCCTCATCAAAGAACCCTCTGGGATACATAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTGTCACAGTTTAATGATATGAGTTTGGCTGGAAATGTTCGTGGTTCATTGGAAACTAGTACAATAACGGACGCCACTAACTTGGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTGGCAGCTTACCGAACAGCTGCTGATGCAGCAGCGCGCATACAAACTGCATTCCGTGAGAATTCTTTAAAGCAAAGGACTCGAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTGTTGCAGCCATGAAGATTCAACATGCTTACCGCAACTTTGAATCACGAAAAAGAATGGCAGCTGCAGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGAGTTCCTTAATATGCGTCGTCATGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAATGCGGAGGCAGTATCGCAAGATTTTATGGTCAGTAGGCGTAATCGATAAAGCCATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAATTGGCATAGAAGAGGACTTCTACCACGTGTCCCAAAAACAAGCAGAAGAGCGAGTAGAGAAAGCTGTTGTACGGGTTCAGGCTCTGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGAAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAATTTGAGTAGCTGA 2754 41.79 MSLAMKADVQGSLVGSEIHGFHTLQELDVTNIREEASGRWLRPNEIHAILCNNKYFVIHVKPVNLPTSGTIVLFNRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNVERIHVYYAHGLDNTTFVRRCYWLLDKTLEHIVLVHYRETQEVNFSTMHLQSSPSMSMNSNSGSVSDPSTPCLLSEELDSRDNHGYSVDENELSEPRDTTTAMNHEQRLHEINTLEWDELLVTDEPFKPSMPKGDRFSYFDQRSQVPTNVTNNLLGNTPLFNNPVESIGSAYMPLSSGQTNLNVESKESIPITSLDNLLNDGLLQSQDSFGRWINEVITESPDTVIDPAIEPSISSIHNSFTDPTLNHCQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYLHLANSNILVVCGNASVNAELIQPGVYRCVVQPHSTGLVNLFVSLDGHKPISQVLNFEYRAPLSREPVVASEQIQKWEEFQVQMRLAHLLFSTSRSLSIMSTKLSPTSLNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQARDGVLEIILKSRLREWLIERVAEGSKKSTDFDIKGQGVIHLCAILGYTWAIHLFSWSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYIAADLASMNGYDGLAAYLSEKALVSQFNDMSLAGNVRGSLETSTITDATNLDSISEEQMYMKETLAAYRTAADAAARIQTAFRENSLKQRTRAIEFSTPEDEARGIVAAMKIQHAYRNFESRKRMAAAARIQYRFRTWKIRKEFLNMRRHAIRIQAAFRGFQMRRQYRKILWSVGVIDKAILRWRLKRKGFRGLQVAPAEVTEQQEIGIEEDFYHVSQKQAEERVEKAVVRVQALFRSKKAQEEYRRMKLTYDEAALEYEELSHPDMNLSS 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7703562 7713606 + CmaCh08G012660.1 Cma08g01266 299961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01266 917 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Cma08g01266 917 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Cma08g01266 917 Gene3D Immunoglobulins 362 458 IPR013783 -
Cma08g01266 917 Pfam CG-1 domain 36 148 IPR005559 GO:0003677
Cma08g01266 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 911 - -
Cma08g01266 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 911 - -
Cma08g01266 917 Pfam IPT/TIG domain 369 454 IPR002909 -
Cma08g01266 917 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Cma08g01266 917 ProSiteProfiles IQ motif profile. 770 796 IPR000048 GO:0005515
Cma08g01266 917 SUPERFAMILY Ankyrin repeat 569 667 IPR036770 -
Cma08g01266 917 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cma08g01266 917 Gene3D - 511 668 IPR036770 -
Cma08g01266 917 Pfam Ankyrin repeats (3 copies) 562 634 IPR002110 GO:0005515
Cma08g01266 917 SMART iq_5 870 892 IPR000048 GO:0005515
Cma08g01266 917 SMART iq_5 792 814 IPR000048 GO:0005515
Cma08g01266 917 SMART iq_5 769 791 IPR000048 GO:0005515
Cma08g01266 917 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cma08g01266 917 CDD IPT_PCSR 368 455 - -
Cma08g01266 917 Coils Coil 884 904 - -
Cma08g01266 917 Gene3D - 771 817 - -
Cma08g01266 917 SUPERFAMILY E set domains 368 455 IPR014756 -
Cma08g01266 917 ProSiteProfiles IQ motif profile. 793 817 IPR000048 GO:0005515
Cma08g01266 917 Pfam IQ calmodulin-binding motif 794 814 IPR000048 GO:0005515
Cma08g01266 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 896 IPR027417 -
Cma08g01266 917 SMART ANK_2a 605 634 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01266 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1429.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01266 Cma14g01565 CCT
Cma08g01266 Cma17g00358 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01266 Cma-Chr8:7703562 Cma14g01565 Cma-Chr14:11743952 9.89E-141 dispersed
Cma17g00358 Cma-Chr17:1984908 Cma08g01266 Cma-Chr8:7703562 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35569 PF12796 Ank_2 1.30E-06 CL0465 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01266 Cma_Chr08 FPKM 12.072695 13.715955 21.081526 21.441339 17.565983 17.152241 19.018557 23.69108 22.866528 24.739672