Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01268 ATGCCTCTACACCAGGCTAAGTCCTTCGGGTCGACTCTGCGCCGAGGCGAAGGAAACCCTAGAATTTGCAGCCGCCGCTGGGTCCGAGAAATGGCCAAGTCGAAGAACCACACAGCGCACAATCAGTCCCGAAAAGCCCATAGGAATGGCATCAAGAAGCCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGATCCCAAGTTTCTGAGAAACCAAAGGTACGCCAAGAAACACAACAACAAGAGTGGTGAAAGCGGTACTGAGGAAGAGTAA 276 52.9 MPLHQAKSFGSTLRRGEGNPRICSRRWVREMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEEE 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7716933 7717845 - CmaCh08G012680.1 Cma08g01268 299963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01268 91 MobiDBLite consensus disorder prediction 70 91 - -
Cma08g01268 91 MobiDBLite consensus disorder prediction 19 37 - -
Cma08g01268 91 MobiDBLite consensus disorder prediction 1 91 - -
Cma08g01268 91 Pfam Ribosomal L29e protein family 33 72 IPR002673 GO:0003735|GO:0005840|GO:0006412
Cma08g01268 91 MobiDBLite consensus disorder prediction 38 62 - -
Cma08g01268 91 PANTHER 60S RIBOSOMAL PROTEIN L29 31 91 - -
Cma08g01268 91 Gene3D - 31 91 - -
Cma08g01268 91 PANTHER 60S RIBOSOMAL PROTEIN L29 31 91 IPR002673 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01268 K02905 RP-L29e, RPL29; large subunit ribosomal protein L29e - csin:114294630 120.938
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01268 Cma17g00361 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01268 Cma-Chr8:7716933 Cma17g00361 Cma-Chr17:1999818 1.10E-38 dispersed
Cma17g00360 Cma-Chr17:1998709 Cma08g01268 Cma-Chr8:7716933 4.19E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g90 Blo01g00052 Blo12g00087 Bda03g01171 Bda08g00313 Bpe04g01109 . Bma04g01135 Bma05g01016 Cmo08g01238 Cmo17g00351 . . . . . . . . . . . . . . Cla06g00437 . . . . . . . Cone15ag0738 Cone7ag0107 Cone4ag0110 . Csa06g01750 Chy11g01560 . . . . . Bpe05g00815 . . . Sed09g0275 . . Cma08g01268 Cma17g00361 Car08g01138 Car17g00333 Cpe12g00313 Cpe17g00059 Bhi12g01917 Tan06g2743 Cmetu11g2549 . Hepe03g0595 . Lcy12g0792 . . . . . . . Lsi09g01481 . . Cme11g02071
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003097 2 2 2 2 2 0 3 0 0 2 2 0 3 2 1 2 0 3 2 0 1 2 3 0 2 2 2 3 3 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01268 Cma_Chr08 FPKM 69.812752 71.538788 53.513355 54.853519 125.425369 105.60376 125.9207 31.504501 32.066498 30.034882