Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01270 ATGATTTTTCCATCTTTCCTACGGCTCGAGAAGTGGAAAGAAACAAAAACACCGGAGGAGGAGGAACACAGAGGAACACAGACGAAATACGAGCAATTGAAAGCTCCCATTGGTATGGGCGCCCCAGATAGATCTCCCGCGACCTCCAATTCTATGCAGCGTGTCAAAGTATATCGTTTGAATGATGATGGAAAATGGGATGATCAAGGAACAGGGCATGTTACTGTTGACTATTTGGAGAGATCGGAGGAGTTGGGATTGTGTGTTGTTGATGAAGAAGACAGTGAGACTCTACTTCTACATCGTATTAGTTCAGATGACATTTACAGAAAGCAAGAAGATACCATAATCTCTTGGAGAGATCCAGAATATTCTACAGAGTTAGCTCTTAGCTTTCAGGAGACAACTGGATGTTCATACATTTGGGATCACATCTGCAATGCGCAAAGGAATCTCCATTTTAATTCTCTCAACAATGATACGTTCCACAGCATGAACAGTGAGTTAAGGGAGTTGCCTGCAATTGAGCTATCGACTCTGCCATTAATACTTAAGATTGTTACTGAAAGTGGGATTACAGATCAAATGCGGTTAATGGAACTCATAGTTGCCAATCAAGATTTTTTCAAAAAGCTGATGGACATATTTCATATCTGCGAAGATTTGGAAAATCTAGATGGTCTTCACATGATATATAAAATAGTCAGAGGGATCATCATGCTAAATAGCTCACAGATCTTTGAGAAAATTTTTGGAGATGAGTTAATCATGGACATCATTGGTTCTCTAGAATATGATCCAGAGGTAGACCATGTCCAGCATCATCGTAACTTCTTAAAAGAGCACGTCATTTTCAAAGAGGCCATACCCATCAAGGATCCATTGGTCTTGTCGAAGATACACCAAACATACAGAATTGGCTATCTAAAGGATGTTGTTTTGGCTAGAGTATTGGACGAGTCCACAATTGCAAATCTAAATTCCATCATCCATGCAAACAATGCGCTGGTCGTCTCTTTGTTGAAGGATGACAATACATTTATCCAGGAGTTGTTTGTCAAGTTGAAATTGCCAACAACCTCTGAAGTGTCTAAGAAGAATTTGGTACATTTTTTGCATGAGTTTTGCAGTTTAAGCAAAAACTTGCAGATGGTTCAGCAGCTAAGGGATCTTATGAATGAGGGAATTTTTGATGTCATTGCTGATGTATTACAAAGTCCAGATAAAAAGTTTGTGTTAACTGGGACAGATATCCTTATTCTTTTCTTGAACCAAGATCCAAATCTTCTACGTTCTTATGTTGTTAGGAAGGAAGGGATTCCACTCCTAGGACTATTGGTTGAAGGCCTGATTACAGATTTTGGGGAGGAGATGCACTGTCAGTTTTTTGAAATCCTTCGATGTTTACTGGATTCCTACTCGCTATCAGGAGCAGCCCAGAGAGAAGCTGTTGTTGAGATATTTTACGAGAATCATTTGGGTAAACTAATTGATGTTATAGCAGTTTCATGCCCTTCAGAAGGTCTTCATACATTGAGCAACAAAATTGGTCGCTCTAGTGTATTAAAGAATCAGAGCATTGTAAAGCCGGAAATACTATCCAACCTTTGTGAATTGCTTTGCTTTTGTGTTCTCCACCATCCTTATAAAATAAAGAGCAACTTTCTCGTGAATAATGTCATAGATAAAGTGTTGTTACTGACTCGAAGAAAGGAAAAATACTTGGTTGTTGCAGCTGTTCGGTTTGTTCGTACTATTTTATCTCGCCATGATGATGATCTGGTCAATCATTTTATAAAAAATAATCTTCTAAAACCAATTATAGATGCCTTCATTGCTAATGGGAATCGTTACAATCTGCTCCACTCTGCTGTTTTAGATTTATTTGAGTATATCTGCAAGGAAAATCTGAAATCTTTATTTAAGTACATAGTTGGTTCATTCTGGAATCAGTTGGTCCAGTTTGAGTATTTGGCTACAATCCAGTCTCTAAAAGTTAAATATGAGCAGTGCCTAGAGGATTTTAGTACAAGAGGCACAACTACTAATGTATTAGATCCTAGAAAAAGAATCGAGGAGCGTGCTTTGGAGAAAGAAGAAGAAGACTATTTTAATGGAGAGAGTGATGAAGAGGATACTGCAACTGCATCTGTTTCAAATGTACAGAAATCGCAATCTTTACCTGTTCTATGTAATGGAGTTGCTGCAAGTTACCCTCCACGAAGTCCTCAGCCTGGTGGTGGACTTGTTGACTATGATGATGAAGATGACGATGAGAACTACAGGCCACCCCCACGAAAACAATCAGAAACAGTGGATGAAGATGAAGGATCACTACATACTCTCAGGTTGAAGCGGAGGCCCGTTCACAAGGACAAGGAGGCAAAAAAGCAGCGACTGGGAAGGAATCCCAAGATGAGTAATGGTGTATTTGCTGCCTTGTGTTCAACATTGAGCCATACAGTTCTGCCTGATAAGGTTACAGCCATCTCCCAGCAACCTAAGCCCCATTTGATTGATCCGAATAATAGTTCAGATCACGAGAGTCCGAAAGGGCAGGATCAGAATGCTTTAAGAACCGCAATCGATAGCAACAGTAGTTTGGACGAGGAGAACCATACAGAAAAGCCACCAATTTCTTCTAAAAAGTGTTCTGATCAATTGCTTAATCCTTCAGAAAATAGACAGTTGAATGGAGAAGACTGTTCATTGATTCCTCCAAACTCATCGCCTGAAATGACTGTAAATGGATCCTAG 2757 39.54 MIFPSFLRLEKWKETKTPEEEEHRGTQTKYEQLKAPIGMGAPDRSPATSNSMQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEELGLCVVDEEDSETLLLHRISSDDIYRKQEDTIISWRDPEYSTELALSFQETTGCSYIWDHICNAQRNLHFNSLNNDTFHSMNSELRELPAIELSTLPLILKIVTESGITDQMRLMELIVANQDFFKKLMDIFHICEDLENLDGLHMIYKIVRGIIMLNSSQIFEKIFGDELIMDIIGSLEYDPEVDHVQHHRNFLKEHVIFKEAIPIKDPLVLSKIHQTYRIGYLKDVVLARVLDESTIANLNSIIHANNALVVSLLKDDNTFIQELFVKLKLPTTSEVSKKNLVHFLHEFCSLSKNLQMVQQLRDLMNEGIFDVIADVLQSPDKKFVLTGTDILILFLNQDPNLLRSYVVRKEGIPLLGLLVEGLITDFGEEMHCQFFEILRCLLDSYSLSGAAQREAVVEIFYENHLGKLIDVIAVSCPSEGLHTLSNKIGRSSVLKNQSIVKPEILSNLCELLCFCVLHHPYKIKSNFLVNNVIDKVLLLTRRKEKYLVVAAVRFVRTILSRHDDDLVNHFIKNNLLKPIIDAFIANGNRYNLLHSAVLDLFEYICKENLKSLFKYIVGSFWNQLVQFEYLATIQSLKVKYEQCLEDFSTRGTTTNVLDPRKRIEERALEKEEEDYFNGESDEEDTATASVSNVQKSQSLPVLCNGVAASYPPRSPQPGGGLVDYDDEDDDENYRPPPRKQSETVDEDEGSLHTLRLKRRPVHKDKEAKKQRLGRNPKMSNGVFAALCSTLSHTVLPDKVTAISQQPKPHLIDPNNSSDHESPKGQDQNALRTAIDSNSSLDEENHTEKPPISSKKCSDQLLNPSENRQLNGEDCSLIPPNSSPEMTVNGS 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7720648 7730793 + CmaCh08G012700.1 Cma08g01270 299965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01270 918 MobiDBLite consensus disorder prediction 835 865 - -
Cma08g01270 918 Pfam Phosphatase 4 regulatory subunit 3 205 387 IPR006887 -
Cma08g01270 918 SUPERFAMILY PH domain-like 53 149 - -
Cma08g01270 918 SUPERFAMILY ARM repeat 335 664 IPR016024 -
Cma08g01270 918 MobiDBLite consensus disorder prediction 881 918 - -
Cma08g01270 918 MobiDBLite consensus disorder prediction 696 721 - -
Cma08g01270 918 MobiDBLite consensus disorder prediction 832 918 - -
Cma08g01270 918 Gene3D - 48 168 IPR011993 -
Cma08g01270 918 MobiDBLite consensus disorder prediction 759 783 - -
Cma08g01270 918 Gene3D - 326 645 IPR011989 -
Cma08g01270 918 PANTHER BNAC03G34820D PROTEIN 39 143 - -
Cma08g01270 918 PANTHER BNAC03G34820D PROTEIN 143 918 - -
Cma08g01270 918 MobiDBLite consensus disorder prediction 866 880 - -
Cma08g01270 918 MobiDBLite consensus disorder prediction 734 805 - -
Cma08g01270 918 PANTHER ATP SYNTHASE GAMMA-RELATED 39 143 - -
Cma08g01270 918 PANTHER ATP SYNTHASE GAMMA-RELATED 143 918 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01270 K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 - csv:101215140 1481.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01556 Cma08g01270 CCT
Cma08g01270 Cma14g01597 CCT
Cma08g01270 Cma17g00363 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01597 Cma-Chr14:11985587 Cma08g01270 Cma-Chr8:7720648 0 wgd
Cma17g00363 Cma-Chr17:2011733 Cma08g01270 Cma-Chr8:7720648 0 wgd
Cma06g01556 Cma-Chr6:9732900 Cma08g01270 Cma-Chr8:7720648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g88 Blo01g00051 . . Bda08g00314 . Bpe14g01103 . Bma05g01015 Cmo08g01239 Cmo17g00353 Cma06g01556 Cma14g01597 Car06g01321 Car14g01409 . Cpe08g00157 Cpe03g01335 Bhi01g01080 . . Lac11g0927 . . Lcy11g1349 Cla06g00434 Cam06g0461 Cec06g0467 Cco06g0466 Clacu06g0448 Cmu06g0449 Cre06g1225 . . Cone7ag0106 Cone4ag0109 Lsi05g01584 Csa06g01744 Chy11g01562 Cme06g00778 Blo02g00481 . . Bda13g00212 Bpe05g00814 . Bma02g00925 . . Cmo06g01555 Cmo14g01627 Cma08g01270 Cma17g00363 Car08g01140 Car17g00336 Cpe12g00315 Cpe17g00061 Bhi12g01920 . . . . . Lcy12g0798 Cla05g00694 Cam05g0761 Cec05g0769 Cco05g0765 Clacu05g0752 Cmu05g0717 Cre05g0792 Lsi09g01483 Csa03g01510 Chy06g00746 Cme11g02073
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001634 1 6 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01270 Cma_Chr08 FPKM 9.206495 10.576075 14.394768 14.098924 15.654956 14.205635 16.149866 17.017586 16.303158 18.599312