Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01276 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAGGAAATGTCCAAATTTCTTCTCTCTGGAACTTCCGCTGACTCGAACTCTGACCACCAAATCCAGTATCATCATCATCACCATCAGCGTTCTCAATCGATATCGCCTCAGCGCTCTAGATTTGCTGCGGCTCAGAGGAGAGGTGGCGCTGCTGGAGGTTCAGACAGCGCCGCGGCGGCGTGGAAGAAAGGCTCTTCCTCGTTTCGGCATTCTTCTCCACTTCAGAGGGAGAGTAGGACTTGTGAACCCTCGAATGCCGCCGCCGGAGTCGGAACCAGCGGCGGCTCTGGCCCCGCCGCCGTTAAATTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTAGACCTAAACTATCGCATAATTTACTGGAACCGAGCTGCTGAAATCGTGTATGGATATTCTGCGGCGGAGGCTCTCGGCCAGGATGGCATTGCGCTTCTAGTAGACTCTGAGGACTTTGCCTTTGCAAATGATGTAATTCATCGTGTTATAGCGGGCAAGCATTGGACTGGTCACTTCCCTGTGAAGAACAAGATGGGGCAGAAGTTTATAGTTGTTGCCTCCGACACTCCCTTCTACGATGATGGTGTCTTGGTCGGGATCATCTGTATTTCGAGCGACTCACGGCCATTTCAAGAGTTGAAGATTCCTTTAGCAGCAGGTTCTAAACAGCAGGATGCAGATTCAAGTATTGTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAACAGCCTCTGCAAGTAGCAATTGCTTCAAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACCAGAGAAAACAGCTTGGATCGTGAAGGTGGAAGCGGAGATGGTTATCACTCTGATCATGGCTTTCCAGATGCAACTCTTCGTGACCGTCGGGACGACGCAAATTCAAGTGGAGCTAGCACACCTCGTGGAGATTCCACGACGCATGGTGAGTTTTCCCAGGTTGAAGAGAAATTATCTGGCAAACAGGTCAGGAATCATGACGATGAGGTTAAAGGAAAGCCTACCATTCAGAAGATGCTATCCTCAAAAGCAGAAGAGTGGATTGCTAAGAAGGGCTTATCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGAATCTGAAGCAAGGGCAGCCCGTTTTGTCTGGCCTTGGTTACAAAATGATCAAGAAGCTGAACCAGCAAATCATAAGAGTTGCTCCTCATCTGGGAGACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGCCAATAACGAGGCCTCGGGATCCTGGTCATCGTTCAATGTTAACAGCACAAGCAGTGCGAGTAGCTGTGGAAGTACCAGTAGTAGTGCCGTCAACAAGGTCGACTCGGAAACAGACTGCTTGGATTTTGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAACTCCGACACCCGAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTTTGCATAGTCACGGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACGCAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGTGGCATGAACTATCTTCATCATTGCAATCCGCCTATTATTCACCGAGATTTGAAATCGTCGAACCTGTTAATTGATAGAAATTGGACTGTAAAGGTTGGAGATTTTGGTTTATCTCGACTTAAGCACGAGACTTATCTAACTACGAAGACGGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGCAATGAGCCCTCAGATGAGAAGTCGGACATATATAGTTTTGGAGTGATATTATGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTAATTGGTGCTGTTGGATTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCTCTATGGGCTTCTATAATTGAAAGCTGCTGGCACAGCGAACCTGCAAACAGGCCATCATTCCAGGGTCTGATAGAAAGGTTGAGAGAGGTGCAGAGGAAGTTTGCAAGTCAATTACAGGCAGCTCGTTTTGGTGGAGATAATAACCCTCAAAAGGAAACATAA 2352 47.36 MGTPPAEELLRKIQELEEGQAHLKKEMSKFLLSGTSADSNSDHQIQYHHHHHQRSQSISPQRSRFAAAQRRGGAAGGSDSAAAAWKKGSSSFRHSSPLQRESRTCEPSNAAAGVGTSGGSGPAAVKFTNKQYLNILQSMGQSVHILDLNYRIIYWNRAAEIVYGYSAAEALGQDGIALLVDSEDFAFANDVIHRVIAGKHWTGHFPVKNKMGQKFIVVASDTPFYDDGVLVGIICISSDSRPFQELKIPLAAGSKQQDADSSIVRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTRENSLDREGGSGDGYHSDHGFPDATLRDRRDDANSSGASTPRGDSTTHGEFSQVEEKLSGKQVRNHDDEVKGKPTIQKMLSSKAEEWIAKKGLSWPWKGTEQEGESEARAARFVWPWLQNDQEAEPANHKSCSSSGRPEMQQNDGHRAANNEASGSWSSFNVNSTSSASSCGSTSSSAVNKVDSETDCLDFEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNAGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDRNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPLWASIIESCWHSEPANRPSFQGLIERLREVQRKFASQLQAARFGGDNNPQKET 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7757374 7761520 + CmaCh08G012760.1 Cma08g01276 299971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01276 783 Gene3D Phosphorylase Kinase; domain 1 498 582 - -
Cma08g01276 783 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 37 778 - -
Cma08g01276 783 TIGRFAM sensory_box: PAS domain S-box protein 130 239 IPR000014 -
Cma08g01276 783 SUPERFAMILY PYP-like sensor domain (PAS domain) 132 239 IPR035965 -
Cma08g01276 783 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 778 - -
Cma08g01276 783 Gene3D Transferase(Phosphotransferase) domain 1 583 782 - -
Cma08g01276 783 PRINTS Tyrosine kinase catalytic domain signature 579 592 IPR001245 GO:0004672|GO:0006468
Cma08g01276 783 PRINTS Tyrosine kinase catalytic domain signature 618 636 IPR001245 GO:0004672|GO:0006468
Cma08g01276 783 PRINTS Tyrosine kinase catalytic domain signature 665 675 IPR001245 GO:0004672|GO:0006468
Cma08g01276 783 PRINTS Tyrosine kinase catalytic domain signature 684 706 IPR001245 GO:0004672|GO:0006468
Cma08g01276 783 PRINTS Tyrosine kinase catalytic domain signature 728 750 IPR001245 GO:0004672|GO:0006468
Cma08g01276 783 MobiDBLite consensus disorder prediction 298 383 - -
Cma08g01276 783 MobiDBLite consensus disorder prediction 356 381 - -
Cma08g01276 783 CDD PAS 139 239 IPR000014 -
Cma08g01276 783 MobiDBLite consensus disorder prediction 32 120 - -
Cma08g01276 783 ProSiteProfiles PAS repeat profile. 128 199 IPR000014 -
Cma08g01276 783 Coils Coil 6 26 - -
Cma08g01276 783 Pfam PAS fold 131 236 IPR013767 GO:0006355
Cma08g01276 783 MobiDBLite consensus disorder prediction 89 115 - -
Cma08g01276 783 SMART serkin_6 505 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01276 783 Pfam Protein tyrosine and serine/threonine kinase 505 757 IPR001245 GO:0004672|GO:0006468
Cma08g01276 783 MobiDBLite consensus disorder prediction 430 463 - -
Cma08g01276 783 SMART pas_2 130 197 IPR000014 -
Cma08g01276 783 MobiDBLite consensus disorder prediction 431 463 - -
Cma08g01276 783 CDD STKc_MAP3K-like 511 757 - -
Cma08g01276 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Cma08g01276 783 SUPERFAMILY Protein kinase-like (PK-like) 492 756 IPR011009 -
Cma08g01276 783 MobiDBLite consensus disorder prediction 302 342 - -
Cma08g01276 783 Gene3D PAS domain 140 242 - -
Cma08g01276 783 ProSiteProfiles Protein kinase domain profile. 505 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01276 Cma17g00369 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01276 Cma-Chr8:7757374 Cma10g01052 Cma-Chr10:6473971 1.47E-113 dispersed
Cma17g00369 Cma-Chr17:2061563 Cma08g01276 Cma-Chr8:7757374 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68777 PF07714 PK_Tyr_Ser-Thr 5.10E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01276 - - bhj:120067055 1285.78