Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01280 ATGGATAGTTCTTCGCGGGAAAATCTCATCCTCGTAAACCGAGAACCAAATGCGATCGCGTACCTTACTATCAACCGTCCGAGGTCTCTGAATTCGTTAACGAGGCCGATGATGAAGGATTTGGCTCAGGCGTTTAAGAGCTTGGACAGCGACGAGTCCGTTCGGGCTTCGCCATCACCGCCGCGTTTGAGATCGCGTTGGCCTGTGACATACTCATCGCTGCGAAAGGAGCTAAGTTCGTCGATACTCATGCTAGATTTGGGATATTCCCTTCATGAGGGTTATCTCAGAAACTTCCACAAACAATCGGAGGGTTTGGTAAATCAGGTGGTTGAAGGAGTTGAATTGTTGAAGAAATCTAGAGAGGTTGCAGAGGCCATTTTAAACAACAAGTCGGCCATTAACGATGGCCTGAAGCTGGATCTTGGCCAAGCTCTTGCTCTGGAAAAGGAGAGAGCTCATGAGTATTACAATGGAATGACCAAAGAACAATTTCAGAAAATGCAGGAATTCATAGCTGGTCGGACCTCCAAGAACATGTAG 543 47.15 MDSSSRENLILVNREPNAIAYLTINRPRSLNSLTRPMMKDLAQAFKSLDSDESVRASPSPPRLRSRWPVTYSSLRKELSSSILMLDLGYSLHEGYLRNFHKQSEGLVNQVVEGVELLKKSREVAEAILNNKSAINDGLKLDLGQALALEKERAHEYYNGMTKEQFQKMQEFIAGRTSKNM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7763821 7765984 + CmaCh08G012800.1 Cma08g01280 299975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01280 180 SUPERFAMILY ClpP/crotonase 8 56 IPR029045 -
Cma08g01280 180 PANTHER ENOYL-COA HYDRATASE 4 56 - -
Cma08g01280 180 PANTHER ENOYL-COA HYDRATASE 104 178 - -
Cma08g01280 180 Pfam Enoyl-CoA hydratase/isomerase 15 56 IPR001753 GO:0003824
Cma08g01280 180 Gene3D - 2 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01280 K01692 paaF, echA; enoyl-CoA hydratase [EC:4.2.1.17] - csv:101221248 125.946
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01280 Cma17g00371 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00371 Cma-Chr17:2070159 Cma08g01280 Cma-Chr8:7763821 1.43E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g57 . Blo12g00069 Bda03g01184 . Bpe04g01117 . Bma04g01124 . Cmo08g01246 Cmo17g00361 . . . . . . . . . . . . . . Cla06g00425 Cam06g0447 Cec06g0454 Cco06g0453 Clacu06g0434 Cmu06g0435 Cre06g1212 Cone14ag0715 . . . . Csa06g01868 Chy11g01575 . . . . . . . . . Sed04g3092 . . Cma08g01280 Cma17g00371 Car08g01147 Car17g00346 Cpe12g00326 Cpe17g00070 Bhi12g01937 Tan06g2770 Cmetu11g1821 Lac11g0966 Hepe03g0042 . Lcy12g0854 . . . . . . . Lsi09g01495 . . Cme11g02084
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020006 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01280 Cma_Chr08 FPKM 0.736965 0.992692 1.248096 1.08626 0.438465 0.55074 0.581929 16.874077 17.043291 17.903973