Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma08g01285 | ATGTCTTTTCGCTCTCCCAACCCTCTGTTTCATCTTCTTCACAGTTGTTGTGTTTTGGCCGATCCAGGTTTCGTCTTAGAAGGAACTTCCCAAAAGGATATCTTCTTTGCTTGCTCTTGTTCCGTTAGATCGGATCGGTGCGTCTTGATGGCGTCATCTGTTCTTTCGAACTCCGATCGCATGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAACCACGGCAACAGAGACCGTCATCAAAACCAGAACCTTATTAACTGGAAATCTCAAGCTCAGAAAGAAATTTACTCGTCCAAGCTGGTACGAGCGTTGAATCAAGTGAGGCTCAGTCCTTCGAATGAGGCGCCCCGCCGTGGTAGAGCCGTACGCGAGGCCGCCGACCGAATCCTTGCCGTCGCCGCGAAGGGGAGAACCAGGTGGAGCCGAGCCATTCTAACGAACAGGCTGAAGCTCAAGTTCAGGAAGCCGAAGAAACAGAGAGTATCCACCGCTGGAAACAACCGCCCAAAGAAACCTAGAGTCAGCGTATTTCGGTTGAAAGGAAAAACGTTGCCGGCGGTGCAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCCAGTTGTCGGAAAGAACCTTTGCCGGTTATCCTAGAAGAGGCCACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCTATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGTTGCAGGCTCTAGCTCCGCTCCTCCAAGATGA | 753 | 51.0 | MSFRSPNPLFHLLHSCCVLADPGFVLEGTSQKDIFFACSCSVRSDRCVLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNLINWKSQAQKEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRVSTAGNNRPKKPRVSVFRLKGKTLPAVQRKVRVLGRLVPSCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSVAGSSSAPPR | 250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7781060 | 7782327 | + | CmaCh08G012850.1 | Cma08g01285 | 299980 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma08g01285 | 250 | MobiDBLite | consensus disorder prediction | 58 | 84 | - | - | |
| Cma08g01285 | 250 | CDD | bHLH_AtIBH1_like | 179 | 232 | IPR044549 | GO:0006355 | |
| Cma08g01285 | 250 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 191 | 238 | IPR036638 | GO:0046983 | |
| Cma08g01285 | 250 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 63 | 249 | IPR044660 | GO:0006355 | |
| Cma08g01285 | 250 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 63 | 249 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g01068 | Cma-Chr5:8470923 | Cma08g01285 | Cma-Chr8:7781060 | 1.28E-44 | dispersed | |
| Cma08g01285 | Cma-Chr8:7781060 | Cma10g01164 | Cma-Chr10:8345872 | 2.72E-49 | dispersed | |
| Cma14g01583 | Cma-Chr14:11891942 | Cma08g01285 | Cma-Chr8:7781060 | 5.15E-85 | wgd | |
| Cma17g00376 | Cma-Chr17:2094890 | Cma08g01285 | Cma-Chr8:7781060 | 1.42E-125 | wgd | |
| Cma06g01569 | Cma-Chr6:9819218 | Cma08g01285 | Cma-Chr8:7781060 | 1.34E-85 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma08g01285 | - | - | csv:101220618 | 317.005 |