Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01288 ATGGCCAACTATCTCGCCTTCCATCTTTGTCTAATAATGTTCGAGCTTATAGCAGTCACTTCGGCGAACATGAAAGCATCATACGGAGGAGGGGATGAGAACCAGATGCCCTTCGGCATGCCCCCTTTCTGCCCCGAGGCAGAATCCATCATCTTCTATTGGGTCAAAACTGCCATTACGGAGGACCCTCGAATGGCAGCATCTCTGCTTCGACTCCATTTCCATGACTGCTTTGTCAATGGGTGCGATGCTTCAGTGTTGTTGGACGATAACGACAACTTTGTCGGAGAGAAAACTGCAGCTCCAAATGCAAACTCGCTGAGAGGATTTGAAGTGATTGATGCCATAAAATCTGAGATCGAATCTGTTTGTCCACAGACAGTTTCATGTGCTGACATTCTTGCAATTGCGGCCCGAGACTCTGTCGTTCTTTCTGGAGGACCTGTGTGGAAAGTGGAATTTGGAAGAGGAGACAGCCTGAGCGCCAGCAAAACAGCAGCACAAAACAACATTCCTGCGCCTAACTCCACTGTGGCCACTCTAGTTTCAAAGTTCCAGAACCTTGGCCTTTCTCTCAGAGATATGGTTGCTCTCTCAGGGGCGCACACGCTGGGACGAGCACGATGTGTTTCATTCAGTTCTAGGCTGCAGAATAACGGGAACAGCCCTAATGAAGGAGCAAACCAAGAGTTCATCGAGTCACTAAAACAGCTCTGCTCAGAATCTGGTAACAGCTCGACACTGGCACATCTCGACCTTGTAACCCCAGTGACGTTCGACAACCAGTATTACATCAATCTTCTCACCGGAGAAGGGTTGCTCCAGTCTGATCAAGTTCTTGTAACTAGTGATTACCAAACTAGAGAAATAGTAGAAACCTATGCTGTGGACCCGATTGCTTTCTTTGAAGACTTCAAGCAGTCAATGGTGAAAATGGGATCCCTCAAACCACCCGTTGGAACACAGACCGTGATCCGAACTAACTGTCGTACTCCGAGCTAA 1002 48.1 MANYLAFHLCLIMFELIAVTSANMKASYGGGDENQMPFGMPPFCPEAESIIFYWVKTAITEDPRMAASLLRLHFHDCFVNGCDASVLLDDNDNFVGEKTAAPNANSLRGFEVIDAIKSEIESVCPQTVSCADILAIAARDSVVLSGGPVWKVEFGRGDSLSASKTAAQNNIPAPNSTVATLVSKFQNLGLSLRDMVALSGAHTLGRARCVSFSSRLQNNGNSPNEGANQEFIESLKQLCSESGNSSTLAHLDLVTPVTFDNQYYINLLTGEGLLQSDQVLVTSDYQTREIVETYAVDPIAFFEDFKQSMVKMGSLKPPVGTQTVIRTNCRTPS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7797609 7799237 - CmaCh08G012880.1 Cma08g01288 299983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01288 333 Pfam Peroxidase 55 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Cma08g01288 333 Gene3D - 44 330 - -
Cma08g01288 333 PANTHER PEROXIDASE 40 40 330 - -
Cma08g01288 333 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 SUPERFAMILY Heme-dependent peroxidases 43 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 ProSiteProfiles Plant heme peroxidase family profile. 44 333 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 Gene3D Peroxidase, domain 2 172 313 - -
Cma08g01288 333 PANTHER PEROXIDASE 72-RELATED 40 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g01288 333 CDD secretory_peroxidase 44 330 IPR033905 GO:0004601|GO:0042744
Cma08g01288 333 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00767 Cma-Chr4:3896086 Cma08g01288 Cma-Chr8:7797609 7.88E-110 dispersed
Cma08g01288 Cma-Chr8:7797609 Cma20g00313 Cma-Chr20:1550512 3.20E-97 dispersed
Cma19g00444 Cma-Chr19:5397025 Cma08g01288 Cma-Chr8:7797609 2.37E-44 dispersed
Cma08g01288 Cma-Chr8:7797609 Cma16g00634 Cma-Chr16:3271830 4.22E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01288 K00430 - csv:101205763 578.556