Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01289 ATGTGCCGTTTTTTCAACAATGTTGCTTCAGACGACGCCGCCGGAGTTTCTTCCGACTACCCGGAGGTGGTGGCCGAAGCGGTTAGTCATTCCCGGTTTTCTTTAGTTCTCTACGCTACCACCCCTCCGCCTCCGCCGCCCTCCTCCTCCTCCTCCTCCGACCGCCTTCTTAATATTCCTTCAACTCCTAATTCCTCCTCCGACACCGGCGACCTGGATCCTTTCAACAAACACAAGTTGAAGCCCAAAAACAAGAACATAAAAAGGGCTACACAACCCAGATTTGCGTTCATGACCAAGACCGAAATGGATCATCTCGACGACGGTTACAGGTGGCGGAAGTACGGTCAGAAAGCCGTTAAAAACAGCCCCTACCCAAGAAGCTATTACCGCTGCACCACCGCCGGCTGCGGCGTCAAAAAGCGAGTCGAACGATCCTCCCACGACCCTTCCGTCGTCGTCACCACTTACGAAGGTCAACACAATCATCAAAGCCCCATCTTGCCACGTGGATCCCTCTCACCATCAATTTCCACCTCCGCCGCCCTCCATCCACCGTCCCTTCTTTTCCAACACCAACAATACACCTACACCTACACTCCGCCACCGCCGCCGCCAATGGAGGTTGTCAGGTGCGGAGGATTCGAACCGATGTTCCATTGTTTCGGACAAGAACGGCGCCGTATTGGTGGATCCTCTCCTAGTTCTGCTTCCTTCAAAGACCATGGGCTTCTGCAAGATATGATCGTACCCTCCTCCTCCTCCTCCTCCTTACACATCCTCAAAGAAGAGTAA 795 53.58 MCRFFNNVASDDAAGVSSDYPEVVAEAVSHSRFSLVLYATTPPPPPPSSSSSSDRLLNIPSTPNSSSDTGDLDPFNKHKLKPKNKNIKRATQPRFAFMTKTEMDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSHDPSVVVTTYEGQHNHQSPILPRGSLSPSISTSAALHPPSLLFQHQQYTYTYTPPPPPPMEVVRCGGFEPMFHCFGQERRRIGGSSPSSASFKDHGLLQDMIVPSSSSSSLHILKEE 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7800804 7804554 - CmaCh08G012890.1 Cma08g01289 299984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01289 264 ProSiteProfiles WRKY domain profile. 101 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g01289 264 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g01289 264 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 37 249 - -
Cma08g01289 264 MobiDBLite consensus disorder prediction 51 71 - -
Cma08g01289 264 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 37 249 IPR044810 GO:0003700
Cma08g01289 264 Gene3D WRKY domain 83 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma08g01289 264 SUPERFAMILY WRKY DNA-binding domain 98 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma08g01289 264 SMART WRKY_cls 106 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g01289 264 MobiDBLite consensus disorder prediction 41 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00418 Cma-Chr5:1889454 Cma08g01289 Cma-Chr8:7800804 1.07E-27 dispersed
Cma08g01289 Cma-Chr8:7800804 Cma20g00797 Cma-Chr20:3733279 6.52E-49 dispersed
Cma14g00940 Cma-Chr14:4878868 Cma08g01289 Cma-Chr8:7800804 1.18E-44 dispersed
Cma14g01581 Cma-Chr14:11876011 Cma08g01289 Cma-Chr8:7800804 1.67E-55 wgd
Cma17g00379 Cma-Chr17:2109793 Cma08g01289 Cma-Chr8:7800804 4.12E-78 wgd
Cma06g01571 Cma-Chr6:9833175 Cma08g01289 Cma-Chr8:7800804 2.92E-52 wgd
Cma08g00480 Cma-Chr8:2725379 Cma08g01289 Cma-Chr8:7800804 2.37E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35570 PF03106 WRKY 1.40E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01289 - - cpep:111778475 359.762