Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01298 ATGGTAGCTGAAGCTGAGATCATGTGCACCAAAACCGTTCCTGTCATGAACCTCAACTATCATCTTCGCGTAGCCGAAGACCGCGATGTTCAGATCGATTTGCCGCATCCTTCTTCTTCACCTATCTTTCCCGAGGCAGTTAAATGTTCAGATATCGCTGAAGATGCCCATTTACTGTCAACTGCCATAGATATTGTTCCAAACATTCGATCTGGTAGCTACGCGGACATTGGAGCTCGGGATTCTATGGATGATGAACATATCTGCATTGATGATCTGTCTACCCACCTCAGATCTATGTTCAAGTGTCCTGTGCCAAGTGGTTTTTATGCTGTTTTCGATGGTCATGGAGGGCCTCATGCAGCTGGCTTTATCAAGAGGAATGCCATTAGATTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTAGTTCTATTTCCATGAAAGATTTGGAGAGTTCTCATCGCAAAGCGTTTCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTGGAAGCTCATGTGGGACAACTGCGTTGACGGCATTGATTCTTGGAAGTCATTTGCTTGTTGCAAATGCTGGTGACTGCCGAGCGGTCCTATGTAGGAAAGGTGTAGCAGTTCCAATGTCTCAAGATCACAGGCCTTCTAATGTACTCGAGCTCAAGCGAGTGGAAGCGATGGGAGGGTTCGTAGATGATGGGTATGTGAATGGGTATATTTCAGTAACGAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATGGCTCCTCATCACCTCTGATTTCTGAGCCACAAGTGGAGCATGCTATTTTAACGAACGATGACGAGTTCTTGATCCTTGGCTGTGATGGTATTTGGGACGTAATGTCAAGCCAATACGCCGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCAAGAGTTAGTCTTGGAAGCCTTGCGCCTCAACACATCAGATAACCTTACTGCAATAGTAATCTGCCTTTCTTCTCCCAGCTGCATTCCTCAGCAGCGGATATGGAAGCCGCGTAGTCTGACCGAAGAGGCGAGAATCGCAGAGCTTCAGATCCAGCCCCAATTCCAGTTTCTGAATTTCTCCATCTCGCCCAATCAGATGGCACTCGCGAACTGTGCTAGGCGGAAGGCCAACCTTCTATACAGAAACCTCCCTATTTCTTACTCTGATTCCTTCAATCACTCTTTCTCATTCGCATCATTCTCCAGACGCTTTGCCTCGTCTGGATCCGATGAAAACGACGTTGTCGTTATCGGAGGTGGGCCTGGTGGCTATGTCGCGGCAATCAAGGCCGCTCAGCTTGGCCTCAAAACCACCTGTATTGAAAAGCGTGGGGCTCTTGGCGGAACTTGCCTCAACGTTGGCTGTATTCCCTCCAAGGCTCTTCTCCACTCCTCCCACATGTACCATGAAGCTCAGCATTCATTCGCTAGCCATGGAGTGAAGTTTTCTTCTGTTGAGATTGATTTACCAGCCATGATGGCACAAAAGGATAAAGCAGTAGGCAATCTCACACGTGGTATTGAAGGTCTTTTTAAGAAGAATAAAGTGAACTATGTTAAAGGCTACGGAAAATTGGTTTCCCCTTCTGAAGTTTCTGTGGACACCATTGAAGGTGGTAACACGGTGGTGAAAGGAAAAAATATAATAATTGCAACTGGATCTGATGTCAAATCTTTACCCGGGATCACCATTGATGAACAGAAAATTGTGTCATCAACAGGAGCCCTAGCTTTGTCAGAAATCCCCAAGAAACTTGTTGTAGTTGGAGCTGGATACATTGGGCTAGAGATGGGATCAGTGTGGGGTCGACTTGGATCCGAGATCACAGTTGTTGAGTTTGCCCCTGAGATAGTCCCAACTATGGACGGGGAAGTCCGGAAGCAATTTCAGCGTGCTCTTGAAAAGCAAGGAATGAAATTTATGCTAAAAACTAAGGTGGTTAGAGTTGATACTTCAGGGGATGGCGTGAAGCTGACTCTTGAACCGGCATCTGGTGGTGAACAGACGACACTCGAAGCAGATGTTGTTCTTGTATCTGCTGGTAGAACTCCGTTCACTGCTGGACTTGGGCTAGACAAGTTAGGGATTGAAACTGATAAGGCAGGGCGGATTTTGGTAAATGAAAGATTTGTTACAAATGTGGATGGTGTTTATGCAATTGGAGACGTAATTCCTGGGCCAATGTTAGCTCACAAGGCTGAAGAGGATGGGGTTGCCTGCGTGGAGTTCATAGCTGGGAAGATCGGCCATGTTGACTATGACAAAGTCCCTGGGGTTGTCTATACACATCCAGAGGTTGCATCTGTTGGGAAGACTGAGGAACAGGTAAAGGCACTAGGTGTGGAATATCGTGTTGGGAAGTTTCCATTCTTGGCAAATAGCAGGGCAAAAGCAATTGATGATGCTGAAGGGGTGGTCAAAATTTTGGCGGAGAAGGAGACAGACAAGATACTTGGCGTCCATATCATGGCGCCCAATGCTGGGGAGCTTATCCACGAGGCAGTACTGGCCTTACAATATGACGCAGCTAGTGAGGATATTGCCCGCGTTTGTCATGCTCATCCAACGATGAGTGAGGCATTGAAGGAGGCTGCCATGGCAACGTATGACAAGCCCATTCACATCTAG 2682 46.91 MVAEAEIMCTKTVPVMNLNYHLRVAEDRDVQIDLPHPSSSPIFPEAVKCSDIAEDAHLLSTAIDIVPNIRSGSYADIGARDSMDDEHICIDDLSTHLRSMFKCPVPSGFYAVFDGHGGPHAAGFIKRNAIRLFFEDADWLKMLDISSISMKDLESSHRKAFLLADLALADEQSVGSSCGTTALTALILGSHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNVLELKRVEAMGGFVDDGYVNGYISVTRTLGDWDLKLPNGSSSPLISEPQVEHAILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVLEALRLNTSDNLTAIVICLSSPSCIPQQRIWKPRSLTEEARIAELQIQPQFQFLNFSISPNQMALANCARRKANLLYRNLPISYSDSFNHSFSFASFSRRFASSGSDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAQHSFASHGVKFSSVEIDLPAMMAQKDKAVGNLTRGIEGLFKKNKVNYVKGYGKLVSPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEQKIVSSTGALALSEIPKKLVVVGAGYIGLEMGSVWGRLGSEITVVEFAPEIVPTMDGEVRKQFQRALEKQGMKFMLKTKVVRVDTSGDGVKLTLEPASGGEQTTLEADVVLVSAGRTPFTAGLGLDKLGIETDKAGRILVNERFVTNVDGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKIGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYRVGKFPFLANSRAKAIDDAEGVVKILAEKETDKILGVHIMAPNAGELIHEAVLALQYDAASEDIARVCHAHPTMSEALKEAAMATYDKPIHI 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7867236 7875776 - CmaCh08G012980.1 Cma08g01298 299993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01298 893 SMART PP2C_4 60 338 IPR001932 -
Cma08g01298 893 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 770 892 IPR016156 GO:0016491|GO:0050660
Cma08g01298 893 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Cma08g01298 893 CDD PP2Cc 69 340 IPR001932 -
Cma08g01298 893 Gene3D - 60 344 IPR036457 -
Cma08g01298 893 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cma08g01298 893 Gene3D - 575 698 IPR036188 -
Cma08g01298 893 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 774 883 IPR004099 GO:0045454
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 464 479 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 602 627 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 735 742 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 857 877 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 692 706 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 835 850 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 431 453 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 770 791 - -
Cma08g01298 893 PRINTS Pyridine nucleotide disulphide reductase class-I signature 566 575 - -
Cma08g01298 893 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 430 893 IPR006258 GO:0004148|GO:0050660
Cma08g01298 893 Gene3D - 431 755 IPR036188 -
Cma08g01298 893 SUPERFAMILY FAD/NAD(P)-binding domain 428 798 IPR036188 -
Cma08g01298 893 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 465 475 IPR012999 GO:0016668
Cma08g01298 893 PANTHER DISULFIDE OXIDOREDUCTASE 407 893 - -
Cma08g01298 893 PANTHER LEGHEMOGLOBIN REDUCTASE 407 893 - -
Cma08g01298 893 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Cma08g01298 893 Pfam Pyridine nucleotide-disulphide oxidoreductase 431 755 IPR023753 GO:0016491
Cma08g01298 893 SUPERFAMILY PP2C-like 64 341 IPR036457 -
Cma08g01298 893 Gene3D - 773 893 IPR016156 GO:0016491|GO:0050660
Cma08g01298 893 SMART PP2C_SIG_2 85 340 IPR001932 -
Cma08g01298 893 PRINTS FAD-dependent pyridine nucleotide reductase signature 432 451 - -
Cma08g01298 893 PRINTS FAD-dependent pyridine nucleotide reductase signature 563 581 - -
Cma08g01298 893 PRINTS FAD-dependent pyridine nucleotide reductase signature 720 742 - -
Cma08g01298 893 PRINTS FAD-dependent pyridine nucleotide reductase signature 602 620 - -
Cma08g01298 893 PRINTS FAD-dependent pyridine nucleotide reductase signature 691 707 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01298 Cma-Chr8:7867236 Cma17g01008 Cma-Chr17:7344665 3.34E-115 dispersed
Cma14g01885 Cma-Chr14:13335710 Cma08g01298 Cma-Chr8:7867236 1.41E-42 dispersed
Cma16g00804 Cma-Chr16:4449645 Cma08g01298 Cma-Chr8:7867236 1.36E-11 dispersed
Cma17g00362 Cma-Chr17:2002549 Cma08g01298 Cma-Chr8:7867236 1.22E-72 transposed
Cma14g01574 Cma-Chr14:11845373 Cma08g01298 Cma-Chr8:7867236 0 wgd
Cma06g01577 Cma-Chr6:9870910 Cma08g01298 Cma-Chr8:7867236 0 wgd
Cma08g00490 Cma-Chr8:2784677 Cma08g01298 Cma-Chr8:7867236 6.75E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01298 K00382 - csv:101207718 922.539