Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01304 ATGGAAGAGCAGTCGAGGTTTTGCTTCGAGTGTCTTAAAGGTCGAATCAGAGTCGATTTCTCCGACCGACTCATAGTCTCCTATTCCATCTCCGACACGGCCCTGCCCTTCACCTCCACCGCCGTTGTTCAGGTGTCAAATGGGGAAACCTCAGGCTCTCAATTTATGATCGTGTATCTGCCAGGCCATGATTACAATTGCATAACCAACTATGTGAATGAGTATTTACTGGACAATTTCAACAGTGGTAACGAAGACACTAAATCTCAGATTAGTGAAGATCAAGTTGAAACTCAAGGGGATAGTCCTCATAAAGGTTTTTTGTATTCGCCACAAATTGGAGAGAAATCACTCACTGACGGTTCTAACTACAACCATTCCAGTAGGCTCTCTTGTTCGAGGATAATCAGTTCTTTGGCCCCCATTGCCCGTATTAGCATTTCATCCCTCTCTACCTTTGATGAAATTGCTTCCAATCTCTTGTCTGGATCTTTGGAAGATCATATATTGCACTCACTTTGTCTCTTAATTGAAGGAAGAGCTTCAGGAAGGGACTCCATAAATTTTCTTAGCTTAGTTGGAATTCCTTCTTTTCAAGAGACTGTCTTCTTGAATTGCTTGAGGCATCCCAATATCGTGCCTGTTCTTTCAATGCTAAGGACTCATGGTTATACGAATGCAATATTGCCTACGACTCCATACACATTAGAGAACATTCTCCATTATAGTCCGGATGCCATAAAGTCTGAGTGGCATATTAGGTTTCTACTATATCAGCTACTATCCGCCCTTGCCTTTATACATGGCTTAGGGATCTTCCATGGCAATATATGCCCATCCAGTGTGATGTTAAATGAGATGTGCTGGTCTTGGCTGCAAATTTGTGATATGCCTGGGTTAGTGTGTGATTTAACTAGGAAAGAAAAAAAATGTTCGATGGCTACATCAGGACAGGTACATTGTTGTGCAAAGGATTGTTCTTCCAAAGCTCTTTACGCTGATTTGAGTGTTACTTCCTCAATAGACTGGCCGTCTGATTTTATGCGATGGTGGAGGGGTGAGTTGAGTAATTTTGAGTATTTACTTGCCTTAAATAGATTGGCTGGGAGAAGGTGGGATGACCACAAATTTCACACAATAATGCCATGGGTAATAGATTTTAGCACAAAGCCAGATGAGAGTTCAGATGTCGGATGGCGAGACTTAAGCAAAAGCAAATGGCGATTGGCAAAGGGTGATGAACAGTTGGACTTCACCTACACTACCTCTGAAATCCCACATCATGTATCAGATGAGTGTCTCTCTGAGCTGGCTGTCTGCAGCTATAAAGCCAGAAGGTTACCTTTAAGCATTTTACGTATGGCCGTCCGTTCAGTTTATGAGCCCAATGAATATCCTTCTAACATGCAGAGGCTTTATCAGTGGACCCCTGATGAATGCATTCCTGAATTTTATTGTGATTCTCAAATATTTTATTCAATGCATGATGGTATGGCTGATTTGGCTGTACCTCCATGGGCAGGTAGTCCTGAGGAGTTCATTAAATTGCATCGTGTTTCTCTAGAAAGTGATCGAGTCTCAGAAAAACTCCATGAGTGGATTGACGTCACGTTTGGATATAAAATGTCAGGTGAAGCTGCTATTGCTGCCAAGAACGTTATGTTGCCTTTATCTGAACCTACGCTCCCAAGGTCGATGGGACGTCGTCAGCTCTTTAGTCGACCACACCCAAAACGGAAAGTTCCAACCAAGAGATCATGTCAAAGCCCTGTAATGTCAGTTGAGAATCAATGCCATGCAAGTGAAGCGGAAGATAAAGATATTATTATGTCTGAAATATCCTATCTAGAAGAATTAGAAGAAGCATCATCATTCCTTGAAGAGGCCAGACATTTAAATGCTGTTTATGGCTATTATGCTAAAAAATTGGAAGATATGACTTCCAAAGAGGTGTTATCGGCTGAGAGCTTCAATAAGTGTTTAACCAATACTTCTGATATATTTGTGCAGCATGAGTTTCGAACCAATATTACACTGAGCTATCTTCTTGAGCATGTTGAAGTGGAGGGTAAAGATTCAATTGGATATCAAGACTTGTTATCATGGAGAGAAAGAATATCTCAATTGCAATTTTCTGATGGTGCTGCGAATGATATCTTTTCTATTGGTTGTATTCTAGCAGAGCTTCATTTGAGGAGGCCACTTTTTCATTCTACCTCATTGACTATGTACTTGGAAAGTGGTATCTTGCCTGGCTTTATGCAAGAACTTCCTCCTGATATAAAAATTCTTGTTGAAGCATGCATCCAAAAGGACTTGACAAGGAGGCCATCAGCCAAAAATATATTGGAATCACCTTGTTTTCCTGCTACAATCAAGTCATGCTACTTGTTTCTAGCTCCACTTCAGATTCTTGCAAAAGATGTTACCCGACTTCGTTATGCTGCAAATTTTGCAAAACAAGGGGCTCTCAAGGCAATGGGAGAATTTGCTGCTGAAATGTGCGCTCCTTATTGTCTGCCTCTTATATTGGCTCCTCAGTCAGATGCGGAAGTAGAATGGGCTTATGTACTACTAAAAGAGTTTTTGAAGTGTCTGATGTCTAAGGCAGTGAAGACTCTGGTTCCTGGTTATTCACATTTGAAGGTTTCTCTTCTCCAAGATTCATTTGTAAGAGAAATATGGAATCGGCTTGGTAAACAAGTGTATATGGAAACAATTCATCCTTTGGTTGTGTCTAATCTATCTGTTGCTCCACATAAGAGCTCAGCAGCTGCTGCTTCAGTGCTTCTTATTGGCTCTTGTGAAGAACTTGGGATGCCTGTTACCATTAATCAGACAATCCTGCCTTTAATTAACTGCTTTGGGAAAGGAATCTGTGCAGATGGCATTGATGCGCTGGTTAGAATTGGTGGTCTTTTTGGTGATATATTCGTTGTCAAGCAGATGCTTCCATTACTCAAGAATGTTGTTAGGTGCTGCATTAAATTTTTTTCTCTGTCCAAACCTGAACCCATGCAAAGTTGGAGTAGTTTAGCCCTTATTGATTGTTTCACCACATTAGATGGCATTGTTGCCTACTTACCAGGTGAAGTGGTATTAAAGGAGCTTATTGAGGGCCAGAAATGTTTGCATGTCATGGTGCTAATTCAGAAGAATTTGGATGTCTCAGTGCTTCAGGTCGCTGCCAGTTCTCTAATGACAGTTTGTCAGCTAATTGGACCAGATATGATTGCATTGCATCTTATACCCCAACTTAGAGAGGTATTCGATGAGCTTGCTTTTTCGCAGGAAGCTGCCTATCGATCTACTTCTCTTGGCAAAAGCATGAAAGTTTCTGGACCAAGCAGTGATGGAGATGTCCCAAATGAAGGCCGCATGGACCTTGTACTGATTTTGTATCCTACTTTTGCATCTATTCTTGGGATAGAAAAGCTCCGACAGTGTTGTACTACATGGTTGCTTCTTGAGCAATATCTTCTTAGGTACCATCACTGGAAGTGGGAATGTACAGGGGAGTCATCCCGAAGCAGTTCAGATAAATTAATGAGTAAGAAGACTGAATTCAGTAAGGGTTCAACTAGTGAATACAGTCCTGCCAAACTTTTACTTAATGGTGTAGGGTGGTCAATCCCTCAATCACAAAGGGCTCAAGGTGCCAAAAACTTGATGCCCCTAAGACGGCTCCATGATGTTCATCAAGGTTCCATGCAAATGCATGCATCAATATGTCACTCTATACAGCTTGAACCCTGGTTTTGGCTCCCTAGTATAGCATCTAGCTGGGATGGACCTGATTTTCTTGGCCGTGCGGTCGGTCTGAAAGAAGAACTTCCATGGAAGATTAAAGCATCTGTTATTTACTCAGTTCGTGCGCATCATGGGGCAGTAAGATCTTTGGCCATTTGTCCAGATGAATTTAATGTTTTCACCGCTGGAATAGGATCTGGATTCAAAGGAATGGTTCAGAGGTGGGAGTTGTCTGGAGTTAACTGTGTTTCTGGTTATTATGGCCATGAAGAGGTTGTCAATGACATTTGTGTTTTGTCGCCTACTGGAAGAATAGCTTCTTGTGATGGAACTATACATGTCTGGAATAGCCGATCAGGAAAGCTCATATCAGTATTTGCAGAGTCATCAGTGGATTCTGCACATCTTGCAAGCCCTTTATCTTCTGTCTTAAAGACAAATGCTGACCATGCCAACTCGATAAGTTCCAATTCATTGTCCAATGGAATACTGACTAGTGCATTTGATGGAAGCTTGTATACATATATGCACCATATAGAATTTGCTGAAAAGCTTGTAGTGGGCACTGGGAATGGTTCTCTGAGGTTTATTGATGTTTCTCAAGGTCAAAAGCTTCATCTATGGAGAGGAGATGGCGTTGAGTCTGGTTTTCCTTCTCTTGTCTCGACTATTTGCTCTTGTGGATTTGACAAAATGGTTGCAGATGGTGCTTCGGCTATGCCTTCCTGGATTGCAGCTGGCCTAAGTTCAGGGTATTGTAGGCTATTTGATGCGAGGAGTGGAAATGTTATAGCCACTTGGCGGGCACATGATGGATATGTAACCAAGTTGGCTGCACCAGAAGATCATATGCTTGTTTCTAGCTCTCTTGACCGGACTTTACGAATTTGGGATCTGAGAAGGCTTTCCCCATCAACGCCAATTATATTGAGGGGTCATAATGATGGTGTATCTAGCTTTTCGATGTGGGGCCAAGACGTCATCTCAATTTCCAGAAACAAGATTGGGCTGTCATCTTTGTCGAAATCTGCGGATGAAGATGGACAATATCGAATTATACCTCAGAATCTCTCGAGCGTGGACCAGGGAACAAGAAATTTATCAGTATTGTCTAGCATTAGTATTCTTCGTTATTCAAGATTATTTGTCGTTGGAACAGAAGATGGTTACATGAAAATTTGTTGTTAG 4938 41.64 MEEQSRFCFECLKGRIRVDFSDRLIVSYSISDTALPFTSTAVVQVSNGETSGSQFMIVYLPGHDYNCITNYVNEYLLDNFNSGNEDTKSQISEDQVETQGDSPHKGFLYSPQIGEKSLTDGSNYNHSSRLSCSRIISSLAPIARISISSLSTFDEIASNLLSGSLEDHILHSLCLLIEGRASGRDSINFLSLVGIPSFQETVFLNCLRHPNIVPVLSMLRTHGYTNAILPTTPYTLENILHYSPDAIKSEWHIRFLLYQLLSALAFIHGLGIFHGNICPSSVMLNEMCWSWLQICDMPGLVCDLTRKEKKCSMATSGQVHCCAKDCSSKALYADLSVTSSIDWPSDFMRWWRGELSNFEYLLALNRLAGRRWDDHKFHTIMPWVIDFSTKPDESSDVGWRDLSKSKWRLAKGDEQLDFTYTTSEIPHHVSDECLSELAVCSYKARRLPLSILRMAVRSVYEPNEYPSNMQRLYQWTPDECIPEFYCDSQIFYSMHDGMADLAVPPWAGSPEEFIKLHRVSLESDRVSEKLHEWIDVTFGYKMSGEAAIAAKNVMLPLSEPTLPRSMGRRQLFSRPHPKRKVPTKRSCQSPVMSVENQCHASEAEDKDIIMSEISYLEELEEASSFLEEARHLNAVYGYYAKKLEDMTSKEVLSAESFNKCLTNTSDIFVQHEFRTNITLSYLLEHVEVEGKDSIGYQDLLSWRERISQLQFSDGAANDIFSIGCILAELHLRRPLFHSTSLTMYLESGILPGFMQELPPDIKILVEACIQKDLTRRPSAKNILESPCFPATIKSCYLFLAPLQILAKDVTRLRYAANFAKQGALKAMGEFAAEMCAPYCLPLILAPQSDAEVEWAYVLLKEFLKCLMSKAVKTLVPGYSHLKVSLLQDSFVREIWNRLGKQVYMETIHPLVVSNLSVAPHKSSAAAASVLLIGSCEELGMPVTINQTILPLINCFGKGICADGIDALVRIGGLFGDIFVVKQMLPLLKNVVRCCIKFFSLSKPEPMQSWSSLALIDCFTTLDGIVAYLPGEVVLKELIEGQKCLHVMVLIQKNLDVSVLQVAASSLMTVCQLIGPDMIALHLIPQLREVFDELAFSQEAAYRSTSLGKSMKVSGPSSDGDVPNEGRMDLVLILYPTFASILGIEKLRQCCTTWLLLEQYLLRYHHWKWECTGESSRSSSDKLMSKKTEFSKGSTSEYSPAKLLLNGVGWSIPQSQRAQGAKNLMPLRRLHDVHQGSMQMHASICHSIQLEPWFWLPSIASSWDGPDFLGRAVGLKEELPWKIKASVIYSVRAHHGAVRSLAICPDEFNVFTAGIGSGFKGMVQRWELSGVNCVSGYYGHEEVVNDICVLSPTGRIASCDGTIHVWNSRSGKLISVFAESSVDSAHLASPLSSVLKTNADHANSISSNSLSNGILTSAFDGSLYTYMHHIEFAEKLVVGTGNGSLRFIDVSQGQKLHLWRGDGVESGFPSLVSTICSCGFDKMVADGASAMPSWIAAGLSSGYCRLFDARSGNVIATWRAHDGYVTKLAAPEDHMLVSSSLDRTLRIWDLRRLSPSTPIILRGHNDGVSSFSMWGQDVISISRNKIGLSSLSKSADEDGQYRIIPQNLSSVDQGTRNLSVLSSISILRYSRLFVVGTEDGYMKICC 1645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7893696 7903914 + CmaCh08G013040.1 Cma08g01304 299999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01304 1645 PANTHER GH12955P 5 1645 - -
Cma08g01304 1645 ProSitePatterns Trp-Asp (WD) repeats signature. 1535 1549 IPR019775 -
Cma08g01304 1645 Gene3D Transferase(Phosphotransferase) domain 1 198 343 - -
Cma08g01304 1645 Gene3D - 1280 1423 IPR015943 GO:0005515
Cma08g01304 1645 SUPERFAMILY WD40 repeat-like 1280 1643 IPR036322 GO:0005515
Cma08g01304 1645 SUPERFAMILY Protein kinase-like (PK-like) 199 301 IPR011009 -
Cma08g01304 1645 Gene3D BEACH domain 345 579 IPR036372 -
Cma08g01304 1645 Gene3D - 1432 1644 IPR015943 GO:0005515
Cma08g01304 1645 Pfam Beige/BEACH domain 349 560 IPR000409 -
Cma08g01304 1645 Pfam Protein kinase domain 198 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01304 1645 Pfam WD domain, G-beta repeat 1331 1366 IPR001680 GO:0005515
Cma08g01304 1645 Pfam WD domain, G-beta repeat 1512 1548 IPR001680 GO:0005515
Cma08g01304 1645 ProSiteProfiles BEACH domain profile. 335 602 IPR000409 -
Cma08g01304 1645 SMART serkin_6 170 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01304 1645 SMART WD40_4 1329 1366 IPR001680 GO:0005515
Cma08g01304 1645 SMART WD40_4 1283 1326 IPR001680 GO:0005515
Cma08g01304 1645 SMART WD40_4 1604 1645 IPR001680 GO:0005515
Cma08g01304 1645 SMART WD40_4 1387 1426 IPR001680 GO:0005515
Cma08g01304 1645 SMART WD40_4 1510 1548 IPR001680 GO:0005515
Cma08g01304 1645 Gene3D Transferase(Phosphotransferase) domain 1 702 795 - -
Cma08g01304 1645 SUPERFAMILY BEACH domain 337 579 IPR036372 -
Cma08g01304 1645 CDD Beach 349 579 IPR000409 -
Cma08g01304 1645 ProSiteProfiles Trp-Asp (WD) repeats profile. 1517 1550 IPR001680 GO:0005515
Cma08g01304 1645 SUPERFAMILY Protein kinase-like (PK-like) 713 816 IPR011009 -
Cma08g01304 1645 SMART Beach_2 347 579 IPR000409 -
Cma08g01304 1645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1517 1550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01304 K17601 WDR81; WD repeat-containing protein 81 - csv:101204693 2903.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01304 Cma-Chr8:7893696 Cma17g01207 Cma-Chr17:8328996 8.89E-23 dispersed
Cma08g01304 Cma-Chr8:7893696 Cma08g00319 Cma-Chr8:1813183 1.24E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g193 . . . . . . . . Cmo08g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00238 . . . . . . . Cma08g01304 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009197 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68778 PF02138 Beach 1.20E-43 No_clan Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01304 Cma_Chr08 FPKM 5.359664 5.216669 6.633336 6.939628 6.050247 6.647259 7.218892 11.871378 10.083129 12.324009