Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00001 ATGGGGTCCGAGCAGAATAGATTCCCTCAGCAGGAACGGAATCTTAGAGTTGGATTCTGGATCCTTTGCAGTGTGCACTTGGATAAGAGTGTTACTATGGAGTACCAGGAAAGTACAGGATTTGGGATGCCTCCTGCGGTTAATACTTTGATGTTGGACTTATGGACTCCAATAATTGAGAAATCCAGCATGAACTGGATATGTGGAAAGTTCCTTTCCTTTCAGAAGGGTGGCTGTTTATCTGTTCCTCAACAAGCTATCTTGTCCAGGATTGTTAGGCTTCTGGATAATTTCGAGAACGACCCTTGCTTCCTACTGGGTTTGACATTTTTTCCTTCAGAGAATTTGCTTGTGGGAAAGAAATGGGGTGGATGCTGGGGTGCATTATCTTGTTTTCACTCTCAGAAAGGAGAAAAGCGCATTGTACCTGCATCTCGTTTACCTGAGGGAAATGTTGTGACAACCCAGCCAAATAGACCTCCAGAAGCCGGAATGGCCATCCAGGCTACAGTGATAGATCCATCCCTACTAGCCCCACCTTCTTCTCCAGCATCCTTTACAAATTCTGCACTCCCTTCAACAGCCCAATCACCGAGCTGTTTCTTGTCGATGTCTGCCAACTCACCTGGAGGTCCTTCATCCACAATGTTTGCTACAGGGCCATATGCACACGAAACACAGCTGGTTTCGCCTCCTGTTTTCTCAGCCTTCACCACTGAACCGTCAACTGCTCCACTCACTCCCCCTCCAGAACTAGCTCACCTGACCACACCTTCTTCCCCTGATGTGCCGTTTGCTGAGTTCCTATCCTCATCAATGGATCTTAAAGGAGCAGGAAAGGAAAATTACATTGCTTCAAATGATCTTCAAACTGCATATTCTCTCTACCCTGGAAGTCCTTCCAGTAGCCTCGTGTCACCAATTTCAAGGACCTCCGGTGACTGCTTATCATCATTTCCTGAGAGGGACTTTCCACCGCAGTGGAATCCTTCAGTTTCTCCCCAAGATGGAAAATATCCTAGAACTGGCTCCGGTCGGCTATTTGGACATGAGAAAGCTGGTACATCTTTGGTATCTCAGGATTCTAATTTCTTCTGCCCTGCTACATTTGCACAATTCTATCTGGACAATCCACCATTCCCTCATACTGGTGGTAGGTTAAGTGTATCAAAGGATTCAGATGTTTACTCGCCTGGTGGGAATGTATTCCAAAATCGGCACAATAAGTCTCCAAAACAAGATGTGGAGGAACTAGAAGCATACCGAGCATCGTTTGGTTTCAGTGCAGATGAAATTATAACTACTACACAATATGTGGAGATATCTGGAGTAATGGAGGATTCCTTTACTATGAAGCCTTTCACTTCAACTAGTCTGTCAGCAGAAGAAAGTTTTGAACCTCCATTGTTGGCTGAAAATCTAAATTCCGCACATACAACCTTACAGAGTCAGAGGAGAATTAAATCACCACCTGATGTTGTCCAAAAGGATACCTGCACTGAAGTGCTGGCATTATGCAGTGTTTATGAAGATAATAAATTGCAAAGACAACCTGGTAACATGTCAGGATCAAGTACCTTAAACCAAGTTGGATCAGATGTATTTTCAAGGATAGGGCCATCAAAAAATAGTCGGAAGTATAATCTTGGTTTATCCTGCTCTGATGCAGAAGTTGACTACAGAAGAGGAAGGAGCCTAAGAGAGGCCAAGGGAGATTTTTTATGGCATGACTAA 1734 44.35 MGSEQNRFPQQERNLRVGFWILCSVHLDKSVTMEYQESTGFGMPPAVNTLMLDLWTPIIEKSSMNWICGKFLSFQKGGCLSVPQQAILSRIVRLLDNFENDPCFLLGLTFFPSENLLVGKKWGGCWGALSCFHSQKGEKRIVPASRLPEGNVVTTQPNRPPEAGMAIQATVIDPSLLAPPSSPASFTNSALPSTAQSPSCFLSMSANSPGGPSSTMFATGPYAHETQLVSPPVFSAFTTEPSTAPLTPPPELAHLTTPSSPDVPFAEFLSSSMDLKGAGKENYIASNDLQTAYSLYPGSPSSSLVSPISRTSGDCLSSFPERDFPPQWNPSVSPQDGKYPRTGSGRLFGHEKAGTSLVSQDSNFFCPATFAQFYLDNPPFPHTGGRLSVSKDSDVYSPGGNVFQNRHNKSPKQDVEELEAYRASFGFSADEIITTTQYVEISGVMEDSFTMKPFTSTSLSAEESFEPPLLAENLNSAHTTLQSQRRIKSPPDVVQKDTCTEVLALCSVYEDNKLQRQPGNMSGSSTLNQVGSDVFSRIGPSKNSRKYNLGLSCSDAEVDYRRGRSLREAKGDFLWHD 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1232 6043 - CmaCh09G000010.1 Cma09g00001 300006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00001 577 PANTHER OS01G0103800 PROTEIN 119 576 - -
Cma09g00001 577 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 119 576 IPR040420 -
Cma09g00001 577 MobiDBLite consensus disorder prediction 323 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00001 - - - cpep:111784739 963.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00738 Cma-Chr4:3751321 Cma09g00001 Cma-Chr9:1232 4.04E-42 dispersed
Cma09g00001 Cma-Chr9:1232 Cma16g00112 Cma-Chr16:507342 1.81E-43 dispersed
Cma01g02058 Cma-Chr1:13066918 Cma09g00001 Cma-Chr9:1232 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g8 . Blo12g00834 . Bda03g00341 Bpe02g00279 Bpe04g00301 Bma04g00310 Bma01g02434 . . . Cma09g00001 . . . . . . . . . . . . . . . . . . . Cone4ag2039 Cone7ag1952 . . . Csa04g02755 . . . . . . . . . . . . Cmo09g00001 . . . Car09g00001 . Cpe02g00001 . . . . . . . Cla11g01866 Cam11g1936 Cec11g1962 Cco11g1976 Clacu11g2101 Cmu11g1903 . . . Chy07g00442 Cme07g00007
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007711 1 1 1 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 0 1 1 1 1 0 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00001 Cma_Chr09 FPKM 11.153098 10.982982 12.000716 11.062543 14.967074 12.891604 15.504602 13.332868 13.126711 14.580917