Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00007 ATGGTGAAGGAGACGGAATGCTGTGACGTGCCTGGACTCACCCCCGCCGCTTCAGAACCCGAAATCGAGAAAGCTTATCACATCAAGGAAGAGGTTGCAGTAGAAAAAGATCATGTAAGAGAATCGGGGACCCCTTATATTACATCAAGACAATTGCAAGATACAGTTAACGCTCATCCAGATGACCCCTCCTCCCATTTCAAACTCGGGATTTTCCTGTGGGAAAATGGCGGAAGCCACGATAAGGCGGTTGCTGCGGATCATTTTCTGAAATCAGCGAAACTAGACCCTCAGAATGCTGCTGCTTTTAAATATCTAGGGGATTATTATGCCACATTTTCTGTTGACATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTTGATGCTCATGATCTCCACTCTGGAGAAGCATTGTGCAATCTGTTGCATCGTGAAGGAAAGGAGAGTTTAGAGGTTGCTATATGCAAAGAGGCTTCCTCTAAGTCAACTCGAGCCTTTTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTTTCAAAAGAAGTGGACTGAAGCCGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTTCTTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAGCGTCTTGGCCGGTTTACTGCTGCAATTAAGTCATATGCACGGGCCATTGAAATTGAAGGAGATAGAATTCTTGCTTGGGTTGAGAGTGGAAATATCTTCTTGATGCTTGGTTTGTTCAAAAAAGGAGTTGAACACTTTCAGCGAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTGCTTGGTTTGGCAAAGGAATGCATTAATAGGGGGGCGTTTAAATGGGCATCCTTTCTGTTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACATATTTAGCTGGGAACTTGTCGTGTATCTGGAAGTTGCTTGGAGATATTCAGCATACGTATGCAAAATGCTATCCATGGATGGAAGAGGACTGGGGGCTATGTGCAGAATCTTTTAGAACTTCTATCCTTTCCTGGAAGAAGACTCGCAGTTTGGCTTTATTGTCTGCCAAATGTTCCTATCAGCAAGCTCTACACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCAACTTTGAATGGTGATTCTGGATCTGAATTCAATTCCTGGCAGATATCTGAAAAGATGACATTAGGGGCTTTGATGCTCGAGGGTGACAATCATGAATTTTGGGTGGCAATGGGATGCATCTCTAACCATGATGCGTTGAAGCAACATGCTTTTATAAGAGCATTACAGTTGGATGGATCGCTGGCTGGAGCCTGGGCTTATCTTGGGAAGCTATACAGGAATAGGGGAGAGATGCAATTGGCAAGACAGGCATTTAATTATGCCAGAAGTATAGATCCATCTCTGGCAATACCCTGGGCTGGCATGTCGGCTGATTTGAATATTAGGGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCATCAATACTACCAGTGGCGGAATTTCAAATTGGACTTGCCAAGCTTTCTCTGCAGGCAGGCCATCTTTCATCTCCACAGGTGTTCGGGGCTATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTAAATGGACTAGCTTTTGAGGCACAATTGGATTATCAATCTGCTGTTGCTGCTTATCGTCTAGCACACCTCACAACTAGCCATTTTTCAGATACAGTTCCAAGGTCTCATGTCAGAGATATATCCATCAACTTAGCCAGATCACTCTGCATGGTAGGAAATTTCTTTGAAGCTTCGCAGGAATATGAAAATTTGAGTAAAGAAGGCATGCTTGACATTGAAGGTCTGCAGGTGTATGCTTTCTCATTATGGAAACTAGGAAAGAATGACCAGGCCCTTAGCACCGTGAGAACCCTTGCTTCTTGCATCTCTACCATGGAAAAAACACGTACTGCTGCATCTGTTGGTTTCATATGCAGATTGTTGTATTCAATATCTGGATTGGATTCCGCAATCAACAGTATCATGAAGATGCCAACCCATTTTTTCCGGAGTTCAAAAGTGAGCTTTGTAGTGGCTGCTATTCAAGCCATTGATGGGTGTGATCGGCTTGACTCCATTGTTCTAAGCTGCCGTTCCTGCCTCCAGTCTCATGAAGAGATAACTAAAATGCACATTTTGATTGCACTTTCTAAGCTGATCAAACATCAAACGGATAACTGCCTGGGATTCCATAGTGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCCAACAGTAGTTTGATGAGGAACTTGCTTGGTTATCTTTTGCTATCCAACGAAGAAAGAGATGACAATCACACAGCTACTAGGTGCTGCAACATGTTGTATGGTTTTGATCAACAGAACAAATGTCTGAAATCTGCATATGAAATTCACGGTGCTGGAGCTGTGGCCTGCTATACAATCGGCACGAGTCATCCGAGGTTTTCTTTCCCAACATGTTCATACCAGTGTCAGAATGGGATTGGGACCATTCGACAGCTTCAAAAATGCTTACGTCAAGACCCATGGAATTATGATGCTCGATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTACGTGCAACTGTTGAGCGGCTAATCTTGGTTGCCTTTTCCAATGAGCCATATTTTAATAAAGATACATCTCATCAATATAAAAAGTTTCAGCTGCTACTTTGTGCATCTGAGATCAGTTTACAAGGCAATGACCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTTCAGACAATTATCTTTTTTATGCACATTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAATGAATTCATAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGTCTTAAATTCATTGCATCTCGATATGAGCTTCATGTTGAATCCAATAGCTTAGAACTTAGTTTCAAGAAAGGATCAGTAGAGATCAAGGATCTGCAACACGTGGTAATACCCGTGTCTAGTCTGGTGGATGGTTTGATATCTTTTTGGAGCCAGGATTTTATGGCTGCTGAGAAGTATTTTGCTCAAGCTTGTTCCTCGGGACGTGATGATGGCTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGTACTTGCAAAGCAGCTTTGCAGTCCTCATTTCTTGAGGCTGGCTGTGAACAGCCTCCTTAAAGCTCAAGTAATTTCCGTTGTTCCAATACCAATGGTCTCGATCACACTGGCTCAAGCAGAAGGGAGTCTTGGTTTGAAAGAAAATTGGGAATCAGGCCTTCGTTTTGAATGGTTCTCGTGGCCACCAGATATGAGGCCTGCGGAGCTCTTGTTTCAAATGCATCTGCTTGCAAAACAGTCGAAAGTTGGTCCTGATCAGTTGAGGGTTGAGTTATGTCAGTCTCCTCTGAGATGGGTTCTTCGCGCAATCCATGTAAACCCTTCTTGTATGAGATATTGGAAGGTGTTGCAAAGCTTGTGGAATGAGGGCTGA 3651 43.25 MVKETECCDVPGLTPAASEPEIEKAYHIKEEVAVEKDHVRESGTPYITSRQLQDTVNAHPDDPSSHFKLGIFLWENGGSHDKAVAADHFLKSAKLDPQNAAAFKYLGDYYATFSVDIERALKCYQRAVSLDAHDLHSGEALCNLLHREGKESLEVAICKEASSKSTRAFWAFRRLGYLQVFQKKWTEAVLSLQHAIRGYPSCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLFKKGVEHFQRALEISPKSITAQFGLSSGLLGLAKECINRGAFKWASFLLEEASKVARGSTYLAGNLSCIWKLLGDIQHTYAKCYPWMEEDWGLCAESFRTSILSWKKTRSLALLSAKCSYQQALHLAPWEANIYTDIAITLDIISTLNGDSGSEFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYRNRGEMQLARQAFNYARSIDPSLAIPWAGMSADLNIRESTSDEAFESCLRAASILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTTSHFSDTVPRSHVRDISINLARSLCMVGNFFEASQEYENLSKEGMLDIEGLQVYAFSLWKLGKNDQALSTVRTLASCISTMEKTRTAASVGFICRLLYSISGLDSAINSIMKMPTHFFRSSKVSFVVAAIQAIDGCDRLDSIVLSCRSCLQSHEEITKMHILIALSKLIKHQTDNCLGFHSGVMHLRKALHAYPNSSLMRNLLGYLLLSNEERDDNHTATRCCNMLYGFDQQNKCLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQDPWNYDARYLLILNILQKAREERFPCHLRATVERLILVAFSNEPYFNKDTSHQYKKFQLLLCASEISLQGNDQIKCINYAKAASSISLSDNYLFYAHLLLCRAYAAENDSNNLRNEFIKCLDLKTDNYLGWVCLKFIASRYELHVESNSLELSFKKGSVEIKDLQHVVIPVSSLVDGLISFWSQDFMAAEKYFAQACSSGRDDGCLLLCHGVTCMVLAKQLCSPHFLRLAVNSLLKAQVISVVPIPMVSITLAQAEGSLGLKENWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGPDQLRVELCQSPLRWVLRAIHVNPSCMRYWKVLQSLWNEG 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38771 60001 - CmaCh09G000070.1 Cma09g00007 300012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00007 1216 Gene3D Tetratricopeptide repeat domain 408 674 IPR011990 GO:0005515
Cma09g00007 1216 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Cma09g00007 1216 SUPERFAMILY TPR-like 50 205 IPR011990 GO:0005515
Cma09g00007 1216 ProSiteProfiles TPR repeat region circular profile. 203 233 - -
Cma09g00007 1216 PANTHER SUPERKILLER 3 PROTEIN-RELATED 49 901 IPR039226 GO:0006401|GO:0055087
Cma09g00007 1216 Gene3D Tetratricopeptide repeat domain 20 393 IPR011990 GO:0005515
Cma09g00007 1216 SUPERFAMILY TPR-like 169 590 IPR011990 GO:0005515
Cma09g00007 1216 Pfam Tetratricopeptide repeat 208 270 - -
Cma09g00007 1216 SUPERFAMILY TPR-like 554 806 IPR011990 GO:0005515
Cma09g00007 1216 ProSiteProfiles TPR repeat profile. 203 236 IPR019734 GO:0005515
Cma09g00007 1216 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 49 901 - -
Cma09g00007 1216 SMART tpr_5 563 596 IPR019734 GO:0005515
Cma09g00007 1216 SMART tpr_5 237 270 IPR019734 GO:0005515
Cma09g00007 1216 SMART tpr_5 278 311 IPR019734 GO:0005515
Cma09g00007 1216 SMART tpr_5 459 492 IPR019734 GO:0005515
Cma09g00007 1216 SMART tpr_5 169 202 IPR019734 GO:0005515
Cma09g00007 1216 SMART tpr_5 100 134 IPR019734 GO:0005515
Cma09g00007 1216 SMART tpr_5 203 236 IPR019734 GO:0005515
Cma09g00007 1216 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00007 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 2073.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00007 Cma-Chr9:38771 Cma11g00959 Cma-Chr11:5061279 4.91E-06 dispersed
Cma09g00007 Cma-Chr9:38771 Cma10g01032 Cma-Chr10:5619791 9.15E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00007 Cma_Chr09 FPKM 10.842794 12.120721 13.477747 13.956538 17.706196 17.411079 19.470377 19.469402 17.603947 20.225534