Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00011 ATGTTTGAGGGTGGTGGTGAACGTGGGGGGAGTGTAGGCCTTCCAATTTGGGAGCTCCGAGAAGGATTTATTTTGGAGTTAACAATAATCCCACCGACACTCCAATCTCCAAATCTCCACGTCCCTGAACCAGTTCTCAAGATCTGCACCTGCAATTATCCACATTCATGCCTGCAACTCGATGATCTTCTCTACTCGATCTGCCAAATTCAACCCACTCCTTCGCTTTCGCTTCCGCAATCTCCCTTTGTGATCGTCTTTCGGAGTTTTGAGTCTTTTTTATACATAACGATGGCTGACATGGATGTGCTCGCCGACTTCTCTGAGGTTAACGAGAAATGTACCTTGGATATGAGTACCTACGAGAATTTGCCTAAAGCCTGCAATGCAGAACCCCTTGACTGTGCTACTGCAATTCCTAAGGATGATACCGACGGTTCTTACGTTTTCGTTAGCTCCAACGATGCTGCAACTTCCGATGATCACGTTGCTTCCGATGTCAATGGGCAAGCAAAGTGTTCCCAGAATGTTGATACGGAGATTAAGGTTCGTGATGGGGAATTGAGTACTGACGACGATAGAAAACCTGAATCGATTTTCGTTTCTGATGCACTGGGGGATTCCCAATTCAATTTTTCTGATCATGTGAATAAGAGTGACGCAATTCTGGATGAGATCAGAGTGGCGGATGTCCTTCAATCTTCTGACGCCAAGGAGGATGAAGCGGAACCTCAACTGAATTTTTCTCCAACGGTGGAAGAAACTCGAATCCCGGAGGGCCAGGCTACCAACGAACCTTTTGATGCAGTGACAAATTCCGGCGAAATCCATGGGGTAGAGTCTCCTCATGAAACTGAAGACATTCACATTCAGGAGGAAAATCAAATAATTTCTACCCCTGGATCTTCTAACCCCGATTCAAATCGTAGTGGAGAAGTCAAGGTGGAGTCTTCTCAAATGGCGGAAGATATTCAAATTCATGAGGATAATGGAATAGTGGGAATCATGAAGTCTTCTGATACCGAAGAAAATCCTGTGATAGACATTGAGGCGGAGTCTTCTCAGAAAGCAGACAGTATCCAGATTCACAAGGAAAATGGAACGGTTGCAATCATGCTTTCTGATACTGAGTCAAACCCTGGGGAAGAAACCGAGGTAGAGTCATCTCTAAAGGCAGACGACACTCAGAATCACGAGGAAAATGGCATAGTGAAAGCCTTTGATTTGTCTAATACCGAGGCAAATCCTAGGTCAGAACTCGAGGAGGAATCTTCTCGGGAGGTGGAGGACATTGAGCTTAGGGGGCAAAATGAAATAGTCGACACCAACACATCGTCTGCTTCCATGGAAAAGCGTGGGGAAGAAGGGGAAGTAATTCCCGAGGATAATGAAACAGTGGTTATCAATGAATTGTCTGATACCATACCTAACCGCAGTGAAGAAACTGAGATGGAATCTTTTGAGAGAGAGGAAAGCATTCGAGAATCACAAGATGCCACGATGGAGGCTGCTGACTGCCATTGTGTTAATGTTCAAGAGAAGGTTGATGAGATGGTAAGTAAAGCTGTGGTAAGCGATTCTGTAGGAGGAATAGGAGAATCTCAAATTATAAGTTTGGGTGCTGCTAAATCCGAGGTAGATCATCTTGATGATTCCGTGGAAGACGTTAAAGGGGAATGTAAACAAGGGGTTGCATTGAATGAAGAGAACCCTGAGAGCACTCAAATTACAATTAGTCAGGATGGCGAACGTTTCCAGGTTGCTGGTGAGGAACAAGAAAGTTTAAATAATGAACTTTCTCTTTTAGAGCCCTCAGAAGAAAACAAAGCGGACATGGAGCAGGATTTGGAAGCAACTCCTAGTCCATTGGTCTGTCCAGAAGACATAAATGGTTCTATGCCCATTAGGACGGATGATGGCTTGCCAACTAGTATGGATCAAGATGACCCCTTGGAGGCTATTGATGACAAAGACACTATAGTTAACAGGACCAGCTTCCATGACCTTACTGAATCCTCACCTGGCTCTGTAGATTATGATATTGCTACTGATGAAACTCATATATTATCTCCTACGATGTTTATTAGTGATCCAAGAGTAGAGTTAAGTGAGATTACCGTGAATGAACAAGTGGTGAATCATGTGTTCGAACTGGAAGAGAATTCAGAGACGGTTTCTCAACCTAAGGTGGACGAATGTATCAAGGTTGGAGATTTGGAATGTACAGTCTCTGGAAATGAAGATGATATGCCCACTGCACTCGACCAATCTAGAATTGCTTGTGGTGACAACTCTGTTGCTGGCAGTCAATTAATCCCCGAGGACATTGAGCGAGTGGAAAGCATTGAAACAGCAGTATCTATTGTTGTGATAGGAAATACTAAGATTGAAATAAGGGAAACGCCTTCTGTGAACTGTCTTAATGATCCATTTCTGAGATCCGATCTTCACGTTGAGCATTATACAATGTCTGAAAATGTGGCCTCTGCTGGTGATGATGTCCTACCGGATCAGGAAGTCAGTGAAAATCGTGAGGATGACCTTCTTGGTGACTCTAATTTTGAGATCATGTGTGAGAACGGTCACATCGAAAAAGACGACCAATCAACTTTCCACAGTAATGATATGAGATCAAAATCTAAGGATTGTACTTCAATTGAAAGTGAAGAGAGAGGTTCCACTGTTCCTGAAGTTTTTAATGGTGTCGTTAAATCTCCTGCAATTCCACAAAGTTCTGCTGTTGAAACAGACTCGGAATCGCATGATAACAAAAGCAGCTCAAGTCTAACTGCTAACGAGAATTCAGTGGATGACATCGAGATTACATCTTCCATGGGAGGTGGTAGCAGAACTATACCTGGCGATGATTGCAGTATGTCAAAAACTGAAGTTCTCAAGCGTTCCATGATAAAAGATGAAGGGAATCTGAACTCAATCTCTGATGTTGTCTTTGAAACTGACGGTAAGCTGACGAAAGATGAAACTGAGGTCATTCATGAGGATTGCCAGAATGAACCTTCACCTGTTTCTCCAGAAGGTTCTGCTGATGCTTTAACGGGGCAAAATGTAGGGGCTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTACCTAGATTTGATGATCAAAATATAAGAGAGCAGATTAAGTGTGCTCAGACAGAAGTTGATCGGAAGACCAAGGATCGAGATGCCATTCGGGTTCAAATACAGACAATGAGGGCTGCATGTAAAGCGTTGAGTGATAATCTTGAAGCAGCAATGTCGGAAGGAAGAGCTGCAAGAGACTTGCTGAAGTCAAAAAGACTGGAGATAGACTCTGTTCAGTCAGTGATAACAAAAGTGAAGAATGCAATGTCCGTTGAGGATATCGATGGCAGGATACGCAACACTGAACACATGATAGAGCATGAAACGCTGCCACTAAAAGAGGAAAAGCAATTACTTCGTGAAATCAAGCAATTGAAGCAGCAGCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGAAGAGCTTCAACAGGCACTGGACCAGAGGGACCAGATTGAAGAGCGCCTAAAGCTATTAAGAAAGGAGATGGATTTACTGAGGGGCAATGTTTTGAAAGCCGAATCAGTAATAAAGGTTGCTAAGAAGAAATATAATGACGAAAGCATAAAGCTGGACGAGTTGCAATCCCAGTTTAAAGCAGCCGATGAGATTCGCCAAGAAGCATATGCTAATTTACAGAGTACGAGGAAGCAATTGTCTGAGAAGAACAAATACTGCTGGAATTATCGGAAGGACGCAAAGGAAGCCAATGAAATAGCATTGAGTGGAGATCTAGAGAGACTGCAACGTTTGTGTGTTAATCAGGTAGAGCGCATGATGGAACTGTGGAACACAAATGCCGAGTTCAGGGAAGAATATATTAAGAGCAACATGAGGAGTACCCTGTGGCGACTAAAGACGTTGGATGGCCGCTCCCTTGGCCCCAATGAAGAGCCGCATGTACCGAACCATATTGTAAAGGAGAGACCAGCGAAGGACAATTCTCTTTTAACGGTTTCAACAATGCAGGAAACAGAAAAATTGATACCCGCTGCTGATGCTGATGATGCGAGAGACAATGACAAATCAGTGACGAAAGTAGCCGAAACGAAGAATCGAACGACAAAAAAGAAGCCGGAAACAGTTGTGGCCTTAGAGAGTGGCCCCAGAAGTATCTCTAGCGAGAATGAGGTAGAAGAGCCACCGCGACCAGTGGAGATTAAGCGAACAAGAGAGGAAGAGGAGCTGGCGGCGAAAGCAGAAGAGTTGAGAAAGGAAGAGGAAGCAATCAAGTTGAAGGAGCGACGTAAGTTGGAAGAGAAGGCCAAAGCCAAAGAGGCGTTGGAGAGGAAAAGAAGAAATGCTGAGAAAGCTCAGGCCAGGGCGGCAATTAAAGAACGGAAAGAGGCGGAAGAGAGAGAGAAGCTAAGGGAGAAAAGAGCAAAGAAGAAGGAAAGGAAGCTGGCAGCTGGGACGGAAGCTGGGAATGGTCGGGATGAAATGGAATGTGCTATAGTCACCAAGACCCCAGCAGCAGAAGGTCCGAAGGAGGAGTCCGAAAACAGAGGTAAACAGGGGACAGCAGCGAAGAGGCGGCCTAAAAAAGCATCGCAGTACACAAAGCAGAGCAAGACAAAGTCAATGCCTCCGCCACTTCGAAACCGGGGTAAGAGGAGGATGCAACCATGGATGTGGATTCTTCTGACAACCCTGGTTGTATTGGCGCTGTTCTTTGTCGGACAACAACAGCTTCTCTACTAG 4794 44.56 MFEGGGERGGSVGLPIWELREGFILELTIIPPTLQSPNLHVPEPVLKICTCNYPHSCLQLDDLLYSICQIQPTPSLSLPQSPFVIVFRSFESFLYITMADMDVLADFSEVNEKCTLDMSTYENLPKACNAEPLDCATAIPKDDTDGSYVFVSSNDAATSDDHVASDVNGQAKCSQNVDTEIKVRDGELSTDDDRKPESIFVSDALGDSQFNFSDHVNKSDAILDEIRVADVLQSSDAKEDEAEPQLNFSPTVEETRIPEGQATNEPFDAVTNSGEIHGVESPHETEDIHIQEENQIISTPGSSNPDSNRSGEVKVESSQMAEDIQIHEDNGIVGIMKSSDTEENPVIDIEAESSQKADSIQIHKENGTVAIMLSDTESNPGEETEVESSLKADDTQNHEENGIVKAFDLSNTEANPRSELEEESSREVEDIELRGQNEIVDTNTSSASMEKRGEEGEVIPEDNETVVINELSDTIPNRSEETEMESFEREESIRESQDATMEAADCHCVNVQEKVDEMVSKAVVSDSVGGIGESQIISLGAAKSEVDHLDDSVEDVKGECKQGVALNEENPESTQITISQDGERFQVAGEEQESLNNELSLLEPSEENKADMEQDLEATPSPLVCPEDINGSMPIRTDDGLPTSMDQDDPLEAIDDKDTIVNRTSFHDLTESSPGSVDYDIATDETHILSPTMFISDPRVELSEITVNEQVVNHVFELEENSETVSQPKVDECIKVGDLECTVSGNEDDMPTALDQSRIACGDNSVAGSQLIPEDIERVESIETAVSIVVIGNTKIEIRETPSVNCLNDPFLRSDLHVEHYTMSENVASAGDDVLPDQEVSENREDDLLGDSNFEIMCENGHIEKDDQSTFHSNDMRSKSKDCTSIESEERGSTVPEVFNGVVKSPAIPQSSAVETDSESHDNKSSSSLTANENSVDDIEITSSMGGGSRTIPGDDCSMSKTEVLKRSMIKDEGNLNSISDVVFETDGKLTKDETEVIHEDCQNEPSPVSPEGSADALTGQNVGAEAGTRPFNFLVKVPRFDDQNIREQIKCAQTEVDRKTKDRDAIRVQIQTMRAACKALSDNLEAAMSEGRAARDLLKSKRLEIDSVQSVITKVKNAMSVEDIDGRIRNTEHMIEHETLPLKEEKQLLREIKQLKQQREQLSSTMGKQEELQQALDQRDQIEERLKLLRKEMDLLRGNVLKAESVIKVAKKKYNDESIKLDELQSQFKAADEIRQEAYANLQSTRKQLSEKNKYCWNYRKDAKEANEIALSGDLERLQRLCVNQVERMMELWNTNAEFREEYIKSNMRSTLWRLKTLDGRSLGPNEEPHVPNHIVKERPAKDNSLLTVSTMQETEKLIPAADADDARDNDKSVTKVAETKNRTTKKKPETVVALESGPRSISSENEVEEPPRPVEIKRTREEEELAAKAEELRKEEEAIKLKERRKLEEKAKAKEALERKRRNAEKAQARAAIKERKEAEEREKLREKRAKKKERKLAAGTEAGNGRDEMECAIVTKTPAAEGPKEESENRGKQGTAAKRRPKKASQYTKQSKTKSMPPPLRNRGKRRMQPWMWILLTTLVVLALFFVGQQQLLY 1597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73155 80646 - CmaCh09G000110.1 Cma09g00011 300016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00011 1597 Coils Coil 1143 1200 - -
Cma09g00011 1597 Coils Coil 1071 1091 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 1407 1423 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 409 429 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 415 429 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 1444 1504 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 1524 1538 - -
Cma09g00011 1597 Coils Coil 1208 1242 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 923 949 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 296 315 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 865 888 - -
Cma09g00011 1597 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 452 1590 - -
Cma09g00011 1597 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 452 1590 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 865 957 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 1444 1567 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 376 395 - -
Cma09g00011 1597 Coils Coil 1420 1498 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 1364 1391 - -
Cma09g00011 1597 MobiDBLite consensus disorder prediction 1364 1423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00011 - - - csv:101219495 1827.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02052 Cma09g00011 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00011 Cma-Chr9:73155 Cma09g00862 Cma-Chr9:4227156 5.11E-32 dispersed
Cma01g02052 Cma-Chr1:13030257 Cma09g00011 Cma-Chr9:73155 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00011 Cma_Chr09 FPKM 13.992559 14.930731 4.616998 5.05946 10.39704 9.91293 10.251943 2.061211 2.013688 2.187773