Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00012 ATGGTAATGGCGCTATTTCATCCACACACTTCGCCTTCTGCAGTTTCATCTTCCTCCGCCTCATTCTATGGGAGTTCTCTTCAACAACTCCGTTCGCGCACCATAGCCCTCAATCTTCGAAACAGCCCCTCCATCCCTCATCGTTTCACTTGCACAGCTTCATGGCAGGAGCTTGCGGGGATTTTGATATTCTCCGCAATTCCTTTCACGGCCGTGAAAGCCATCGCCAATAGCCCATTCGGAGAGTCGCTCCAGAGGCAATTGGAAAAGAAAAAAAATGCTGCGGTCGCCAAGTCTTCGAAGTTCAAGGCTCTTGCTGAGCAGGCTAGAAAAGATAGCTCGTGGTATGGAGAAAAGCGTCCTCGCTGGCTTGGTCCACTACCATACAATTATCCAAAATATCTGACAGGTGAACTGCCGGGTGATTATGGATTTGATATTGCAGGTCTGAGTGAGGATCCAGTGGCTTTTCGGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCGTCCCTTGGTGCTTTAGTTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGATATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATTCCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATCGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCTGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCCGAGGATGCTGCAGCTTTTGAGGAACTGAAAGTGAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCTTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAATCCAAAACCTTCTTGAACACGTTTCAGACCCTTTCCACAATAACTTTCTTTCCCTGCTCAACTCATCATGA 1014 46.45 MVMALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 81081 86559 - CmaCh09G000120.1 Cma09g00012 300017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00012 337 Gene3D Chlorophyll a/b binding protein domain 122 334 - -
Cma09g00012 337 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 51 330 IPR001344 GO:0009765|GO:0016020
Cma09g00012 337 SUPERFAMILY Chlorophyll a-b binding protein 114 334 - -
Cma09g00012 337 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 51 330 - -
Cma09g00012 337 Pfam Chlorophyll A-B binding protein 132 307 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00012 Cma-Chr9:81081 Cma11g01288 Cma-Chr11:8614659 1.49E-63 dispersed
Cma09g00012 Cma-Chr9:81081 Cma19g00866 Cma-Chr19:8059990 8.21E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00012 K14172 - csv:101209460 600.512