Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00016 ATGGACTCTGATTATGGCATTCCTCGTCAGCTCTCCGACCTTCAGAAATTCCGCTCTCTCTACCAACCCGATCTCCCTCCTTGTCTTCAGGGAACAGCGGTCAGGGTTGAATTCGGAGATGGCACTACAGCTGTGGATCCTGCTGATGCCCCCACCATTAGTCGGGCCTTTCCCCACACGTATGGTCAGCCATTAGCTCACTTTCTCAGGGCAACTGCCAAAGTCCCAGATGCTCAGATTATTACTGAACATCCAGCCATCCGGGTGGGAATAGTTTTTTGTGGAAGGCAATCTCCTGGAGGCCATAACGTCATATGGGGGCTTCATAATGCTCTCAAAGTCCACAACCCAAATAGTATATTGCTTGGATTTCTGGGTGGCTCTGAAGGTTTATTTTCCCAGAAAACTCTTGAGATAACCGCTGACATTCTTTCGACATACAAAAATCAAGGTGGTTATGACCTATTGGGCAGGACTAAGGATCAAATTCGAACTAAAGAGCAGGTTAATGCTGCGCTTAAGACATGCCTAGATCTGAAACTAAATGGTCTTGTTATAATTGGAGGAGTGACGTCAAACACTGATGCTGCCCAGCTTGCGGAAACATTTGCTGAAGCTAAATGCCCCACGAAGGTTGTAGGTGTTCCTGTTACTTTGAATGGCGATCTCAAGAACCAATTTGTTGAAACAAATGTTGGTTTTGACACCATATGCAAGGTCAATTCTCAGCTAATCAGCAATGTATGCACTGATGCCCTCTCTGCGGAGAAGTATTACTATTTTATTAGACTCATGGGCCGGAAAGCATCCCATGTTGCTTTGGAATGTACTCTTCAATCTCACCCAAATATGGTTGTTCTTGGTGAGGAAGTAGCTGCATCAAAGCTTACTCTTTTTGATTTGACGACCCAGATATGTGATGCTGTTCAGGCAAGAGCACAACAAGACAAGTACCATGGTGTAATCTTATTGCCCGAAGGGCTCATTGAAAGTATTCCTGAAATCTATGCCCTTTTGAAGGAAATTCACAGTTTACTTAGGCAAGGAGTTCTGGTTGACAATATTTCTTCCCAACTCTCTCCTTGGGCATCCGCGCTATTTGAATTTATGCCACCTTTTATCAGGAAGCAGTTGCTACTTCAACCCGAATCAGATGATTCTGCTCAATTATCTCAGATTGAGACGGAGAAACTTTTGGCTCATCTTGTGGAGGCTGAAATTAACAAGCGTATGAAAGAAGGGACTTACAAGGGGAAGAAATTCAATGCAATTTGCCACTTCTTTGGTTACCAGGCTCGGGGATCTTTACCTTCAAAATTTGATTGTGACTACGCCTACGTTCTTGGGCACGTCTGCTACCATATCTTAGCTGCTGGCTTGAACGGATACATGGCTACTTTAACTAACCTAAAAAATCCTGTAAACAAATGGCGCTGTGGTGCTGCCCCGATTGCAGTTGGGTTTCCTTCTTTTCATGCTGCTATGATGACTGTTAAACGTTGGGCTCAAAATCCCGGAGCGTCATCCATTGGAAAACCTGCAATTCACCCAGCAACTGTGGATTTGAAAGGGAAAGCATACGAGCTATTGAGACAAAATGCGAGTCAGTTTCTTATGGACGATCTCTACAGAAACCCTGGACCTCTTCAGTTTGATGGTCCTGGTGCCGATGCTAAGCCCATCTCTCTGTGCGTTGAGGACCAGGATTACATGGGCCGCATCAAGAAACTACAGGAATATCTTGATAAGGTCCGAACCATTGTAAAACCAGGGTGTTCGCAGGAGGTCCTTAAAGCAGCATTAAGCGTCATGGCATCAGTGACCGACGTTCTATCAGTTATGTCTTCCAGTTCGTTTAGTGGAAAGGCATCATTAGAAGGGTAA 1884 44.85 MDSDYGIPRQLSDLQKFRSLYQPDLPPCLQGTAVRVEFGDGTTAVDPADAPTISRAFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVIWGLHNALKVHNPNSILLGFLGGSEGLFSQKTLEITADILSTYKNQGGYDLLGRTKDQIRTKEQVNAALKTCLDLKLNGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVVLGEEVAASKLTLFDLTTQICDAVQARAQQDKYHGVILLPEGLIESIPEIYALLKEIHSLLRQGVLVDNISSQLSPWASALFEFMPPFIRKQLLLQPESDDSAQLSQIETEKLLAHLVEAEINKRMKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATLTNLKNPVNKWRCGAAPIAVGFPSFHAAMMTVKRWAQNPGASSIGKPAIHPATVDLKGKAYELLRQNASQFLMDDLYRNPGPLQFDGPGADAKPISLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLSVMSSSSFSGKASLEG 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 94539 101005 + CmaCh09G000160.1 Cma09g00016 300021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00016 627 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 10 569 IPR011183 GO:0005524|GO:0006096|GO:0047334
Cma09g00016 627 Gene3D Phosphofructokinase; domain 3 332 396 - -
Cma09g00016 627 SUPERFAMILY Phosphofructokinase 12 565 IPR035966 GO:0003872|GO:0006096
Cma09g00016 627 Gene3D - 18 520 - -
Cma09g00016 627 Gene3D Phosphofructokinase domain 234 555 IPR035966 GO:0003872|GO:0006096
Cma09g00016 627 Pfam Phosphofructokinase 88 454 IPR000023 GO:0003872|GO:0006096
Cma09g00016 627 PIRSF PPi_PFK_PfpB 4 578 IPR011183 GO:0005524|GO:0006096|GO:0047334
Cma09g00016 627 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 1 620 - -
Cma09g00016 627 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 1 620 - -
Cma09g00016 627 TIGRFAM PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase 14 566 IPR011183 GO:0005524|GO:0006096|GO:0047334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00016 K00895 pfp, PFP; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] - csv:101208728 1164.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02045 Cma09g00016 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00557 Cma-Chr3:5168821 Cma09g00016 Cma-Chr9:94539 7.54E-131 dispersed
Cma09g00016 Cma-Chr9:94539 Cma13g00414 Cma-Chr13:4686020 1.15E-128 dispersed
Cma08g00843 Cma-Chr8:5107691 Cma09g00016 Cma-Chr9:94539 1.13E-11 transposed
Cma01g02045 Cma-Chr1:12998834 Cma09g00016 Cma-Chr9:94539 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g33 . Blo12g00840 . Bda03g00336 Bpe02g00290 Bpe04g00295 Bma04g00304 Bma01g02424 . . Cma01g02045 Cma09g00016 Car01g01611 . . . . . . . . . . . . . . . . . . . . Cone17ag1482 Cone20ag0004 Lsi04g02427 Csa04g02743 . . . . . . . . . . . Cmo01g02102 Cmo09g00015 . . . Car09g00015 . Cpe02g00011 . . . . . . . Cla11g01857 . Cec11g1951 . . Cmu11g1892 . . . Chy07g00431 Cme07g00019
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00016 Cma_Chr09 FPKM 46.828045 49.539543 52.433586 52.119354 43.078136 39.529266 41.25103 28.337809 26.121944 26.4123