Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00018 ATGGCGACGGTGGCGAGGAAGGGTAAAGTTTGTGTTACAGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGCTATCCAGGGAGTATACTGTCCACGGAACTGTCAGGGAACCCAGTGACGCCAAGTATGATCACTTGAGAAAACTCGAGAAAGGGACCGACAATTTGAAACTGTTTAAGGCTGATTTACTGGACTATGAATCTATGCGTTCTGCGATCGCAGGATGTGATGGAGTTTTCCATGTTGCCAGTCCAGTTCCTCACACAACTTCATCAAACCCTGAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACACGTAATGTGCTTGAAGCATGTGTGGATGCAAAAGTTAAGCGAGTTGTTGTAGTATCCTCTGTTGCTGCAGTGTTTTGCAATCCCAGCTGGCCTCAAGGTCGGGTAATAGATGAAAGTTGTTGGTCTGACAAGGAGTACTGCAAAGCTACCAAGAACTGGTATTTTCTGGCAAAAACAGAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGACGTGGGCTTGACGTTGTGACTATTTGTCCTACCCTCGTTATCGGGCCGATTTTGCAGCCAACAGTCAACGCCAGCAGCATGGTTCTTCTCAGAATTCTTAAAGAAGGACTCGAGACGTTGGAAAACAGGCCACGAATGTTGGTAGACGTACGAGACGTAGCAGAGGCATTAGTTGTTTTATATGAGAAGGGGGAGGCAGAAGGAAGGTACATTTGTACATCGCATACAATGGAGACAAGGGAGCTGGTGGATGCATTGAAGAAGAAGTACCCTGATTATAGCTATCCAAAGACGTTGAGTGAAGGGAATGAAAAGGCGGTAAGTCTGAGCTCGGAGAAGCTGCAAGGGTTGGGTTGGAAGTGTCGGGCGCTGGAGGAGACGCTTGCCGATGCTGTGAAGAGCTTCAAAGACGCCGGTATTGCATTGTTTATTATCATCTCTCACTCTGTTACTCGAGCTGAAAACACTCCAAGCCACGACTTAGTTTCTAAACCAATAAAATACCAACCATGTATTCAGCTCGCCGGAGCTTTCTTTCTCTATTACTTCCTCATCGTCGGATACTTTGTTCGTTGTATATCCATGGCGGCTAATTTACCGGTCCAAGATCCCCCCACGGATGCTTCTGCGAAACAACCTACGCTTTCGCCATCCCCCGCTCCTGTAACCCCTCCCGTTAAGATCGACACTCCTCACTCCGACTCTGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGGTATCCAGGGATTATATTGTCCACGGAACTGTCAGGGAACCCGGTGACGCCAAGTATGATCACTTGAGAAAACTCGAGAAAGGGACCGACAATTTGAAACTGTTTAAGGCTGATTTACTGGACTATGAATCTATGCGCTCTGCGATCGCAGGATGTGATGGAGTTTTCCATGTTGCCAGTCCAGTTCCTCACACAACTTCATCAAACCCTGAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACACGTAATGTGCTTGAAGCATGTGTGGATGCAAAAGTTAAGCGAGTTGTTGTAGTATCCTCTGTTGCTGCAGTGTTTTGCAATCCCAGCTGGCCTCAAGGTCGGGTAATAGATGAAAGTTGTTGGTCTGACAAGGAGTACTGCAAAGCTACCAAGAACTGGTATTTTCTGGCAAAAACAGAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGACGTGGGCTTGACGTTGTGACTATTTGTCCTTCCCTCGTTATCGGGCCGATTTTGCAGCCAACAGTCAACGCCAGCAGCATGGTTCTTCTCAGAATTCTTAAAGAAGAGTGCGAGACGATGGAAAACAATCCACATATGTTGGTAGACGTACGAGACGTAGCAGAGGCGTTGATTCTTTTATATGAGAAGGGGGAGGCAGAAGGAAGATACATTTGTACATCGCATACAAAAGAGACGAGGGAGCTGGTGGATGCATTGAAGAAGAAGTACCCTGATTATAGCTATCCAAAGACGTTGAGTGAAGGGAATGGGAAGGCGCTAAGTCTGAGCTCGGAGAAGCTGCAAGGGTTGGATTGGAAGTGTCGGGCGCTGGAGGAGACGCTTACCGATGCTGTGGAGAGTTTCAAAGACACCGGGATGTTGGAGTGA 2175 47.77 MATVARKGKVCVTGAGGFIGSWVVKLLLSREYTVHGTVREPSDAKYDHLRKLEKGTDNLKLFKADLLDYESMRSAIAGCDGVFHVASPVPHTTSSNPETEVIEPAVKGTRNVLEACVDAKVKRVVVVSSVAAVFCNPSWPQGRVIDESCWSDKEYCKATKNWYFLAKTEAESEALEFGRRRGLDVVTICPTLVIGPILQPTVNASSMVLLRILKEGLETLENRPRMLVDVRDVAEALVVLYEKGEAEGRYICTSHTMETRELVDALKKKYPDYSYPKTLSEGNEKAVSLSSEKLQGLGWKCRALEETLADAVKSFKDAGIALFIIISHSVTRAENTPSHDLVSKPIKYQPCIQLAGAFFLYYFLIVGYFVRCISMAANLPVQDPPTDASAKQPTLSPSPAPVTPPVKIDTPHSDSGAGGFIGSWVVKLLVSRDYIVHGTVREPGDAKYDHLRKLEKGTDNLKLFKADLLDYESMRSAIAGCDGVFHVASPVPHTTSSNPETEVIEPAVKGTRNVLEACVDAKVKRVVVVSSVAAVFCNPSWPQGRVIDESCWSDKEYCKATKNWYFLAKTEAESEALEFGRRRGLDVVTICPSLVIGPILQPTVNASSMVLLRILKEECETMENNPHMLVDVRDVAEALILLYEKGEAEGRYICTSHTKETRELVDALKKKYPDYSYPKTLSEGNGKALSLSSEKLQGLDWKCRALEETLTDAVESFKDTGMLE 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 110002 117295 - CmaCh09G000180.1 Cma09g00018 300023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00018 724 CDD FR_SDR_e 416 699 - -
Cma09g00018 724 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 321 - -
Cma09g00018 724 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 416 723 - -
Cma09g00018 724 MobiDBLite consensus disorder prediction 383 403 - -
Cma09g00018 724 Pfam NAD dependent epimerase/dehydratase family 10 246 IPR001509 -
Cma09g00018 724 Pfam NAD dependent epimerase/dehydratase family 416 648 IPR001509 -
Cma09g00018 724 Gene3D - 415 724 - -
Cma09g00018 724 Gene3D - 2 329 - -
Cma09g00018 724 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 416 723 - -
Cma09g00018 724 CDD FR_SDR_e 10 299 - -
Cma09g00018 724 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 5 321 - -
Cma09g00018 724 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 316 IPR036291 -
Cma09g00018 724 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 416 718 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00018 Cma-Chr9:110002 Cma14g01057 Cma-Chr14:5613286 3.21E-83 dispersed
Cma09g00017 Cma-Chr9:100296 Cma09g00018 Cma-Chr9:110002 3.55E-15 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00018 - - bhj:120087265 546.584