Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00020 ATGAGAATGGCGGGGTACAGCGAAGAAGGAGGAGCGGGTTCACGCTACGTGCAACACCACCATCATCATCATCAACTTCTGAATCCGGAACTGCATCTGGACACGCCCTCCTCCTCCTCTATTCCATTTCCTCATCCTCATCTATTCAACCATTCCAATCACTCCGATGATGGTGATGATAATAACGATACTAATAATACTACTAATCCCTCTCAAAACCAACACGCCTCCCTTCGCCGCCCTCGTGGCCGTCCTCCTGGATCCAAAAACAAGCCCAAACCTCCCATTATCCTCACTCGCGATAGTCCCAACGTCCTCGGCTCTCATGTCCTCGAGGTCTCCGCCTCCGCTGATATCGTCGATAGTCTCTCCAATTACGCCCGCCGCAGAGGGAGAGGACTCAGCATCCTCTGCGGCACTGGTACTGTCGCCAACGTCACGCTCCGTCAGCCATCTGCCTCTCCTACGGCTAGCGTCATCACTCTTCATGGCAGGTTCGAGATTCTCTCCCTCACGGGCACTGTGCTTCCCCCGCCAGCTCCGCCGCAGGCAGGTGGACTGTCTATATTCCTAGCCGGGGCACAAGGGCAGGTGGTTGGAGGGACGGTGGTGGGGCCCTTGGTGGCTTCGGGGCCGGTGATTTTGATGGCGGCGTCATTCTCCAACGCTGTGTTTGAAAGGTTGCCTCTGGAAGAAGAGGAGGAAGGGGGAGTGCAAGTTCAACCGACGGCGTCGCAGTCGTCGGGAGTGACCGGAGGCGGACAGATGGGGGAGGGCGGTGGGAATGCAAACGAGGGGAGCGGCGGCGGAGTTGGGTTCCTGGGCAACAGTACAATAGCGGGATATCCTCCGTTTGCAGGGGATTTGTTTGGTTGGGGAAGTGGAAGTGGAAGTGGGAATGCCACAAAGCCTCGTCAGTTCTAA 924 56.93 MRMAGYSEEGGAGSRYVQHHHHHHQLLNPELHLDTPSSSSIPFPHPHLFNHSNHSDDGDDNNDTNNTTNPSQNQHASLRRPRGRPPGSKNKPKPPIILTRDSPNVLGSHVLEVSASADIVDSLSNYARRRGRGLSILCGTGTVANVTLRQPSASPTASVITLHGRFEILSLTGTVLPPPAPPQAGGLSIFLAGAQGQVVGGTVVGPLVASGPVILMAASFSNAVFERLPLEEEEEGGVQVQPTASQSSGVTGGGQMGEGGGNANEGSGGGVGFLGNSTIAGYPPFAGDLFGWGSGSGSGNATKPRQF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 119736 120659 + CmaCh09G000200.1 Cma09g00020 300025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00020 307 MobiDBLite consensus disorder prediction 62 78 - -
Cma09g00020 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Cma09g00020 307 ProSiteProfiles PPC domain profile profile. 103 243 IPR005175 -
Cma09g00020 307 MobiDBLite consensus disorder prediction 232 269 - -
Cma09g00020 307 MobiDBLite consensus disorder prediction 31 46 - -
Cma09g00020 307 MobiDBLite consensus disorder prediction 1 102 - -
Cma09g00020 307 Gene3D - 108 248 - -
Cma09g00020 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 19 296 - -
Cma09g00020 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 296 IPR014476 GO:0003680
Cma09g00020 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 234 - -
Cma09g00020 307 MobiDBLite consensus disorder prediction 239 253 - -
Cma09g00020 307 CDD DUF296 109 194 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00020 Cma-Chr9:119736 Cma15g00103 Cma-Chr15:479122 4.40E-64 dispersed
Cma09g00020 Cma-Chr9:119736 Cma06g01130 Cma-Chr6:7608057 6.00E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00020 - - cpep:111779195 446.432