Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00027 ATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGGTCATCAGGAGTTGGATTTACCCCACATGTCATCACCGTGGAAGCTGGAGAGAATGGGCCTAGAGCTCTTTGTATCCTTACAGCAAATGGTGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTGTGCTGGAACCGTCACTTACCAGGGGCGATTCGAGATTTTGTCTCTATCTGGATCATATCTCTTCTCCGAGAATGGCACTCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACATAGGTGGTGGGGTGGCTGGTCTTCTAACGGCTGCAACTCCTGTTCAGATACATTAACTTTCCCCATGAGAGCGTTCATATACATCTTTTATAGCCCTATGTATGGTGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCAGTCGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAACCACAGTGCTGGAGCCTGCAATAATAACACTAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAACGCAGCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTTCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTTGGTGTCACCATTGGAGGAAGCATCAGGGGATGTGGAAGCCACCATCTATCCAGCCATGGATATAATATTGTGTACAATACAGCAAAAAATTTCCCCAAGAGAAGAGCTTTAGGAACAGGCAGGGGCGTCCGTTGGTCTTCAAAACTAACTGTTCTGCAATGGATTTACTTCGAGCATATGCATCAACATGATCATCAATTGGGAAATAAGAGAGATTGCAGCAGATACGCATTACTGAATATGCAAATCATCGAAAATTCCGACAAGACCGTTCTAGGGGAAAGGAATGAAAGCCATAAAAAGATTTCAATGGAGGCAAGTAGCGCCAGGATGATCGAAGTGCATGCGTCGTCGGACCAAGGAGAAGCTGGTCGGAGGTCAAAGGCTCGGACCTGGAGAGCACCTCTGCGGACAAGCTCTAAGCAGAGGGCGGAGCCGACGAAGCCCAGTGCGCCGATTTGTTCATATAACTCTAGGCAACCATTGACGCTGGCCGACTCCAAAAGAGGCAAAACAGAGCCTGAAGGGTCCATAAGTGGCGGCGTAAGCATTAAGGAGCTCGTTTTGGGCGGACCAGAAGTCGGCTTTCAGCCCACCCCTCCTAATCGCTTTCAGTATCTTGTTCCGTCTGAGGGATGGAGGCAGGGAAGAAATGCTCCCCGATTCGCATATTCAAGGTATCTGGAAACCCTTCAAAAAGCTTCGTCGTCTTCCTCAATAGTCCACGCTCCCATCCAATCAAATCAAACACAACCTTCCGCCATTGAAATCTCAATCCTAACCATGGGCCTCAAAGTGCTCTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGCCTCTTCACCGACGCCTACGATCTCTTCAGCATCACTCCCGTTACGACCCTCGTAGGACGTGTGTACTACCAGGACAAACAATACGAGATTCCCGCCGCCGTCAAATCCGCCATGCTGGCCGTCGCCCTTCTCGGCACCGCCACGGGTCAAGTGGTGTTCGGCATACTCGGAGATCGAGTGGGACGACGGCGCGTGTACGGACTCGCATTGGCGCTGATGGTGCTGAGTTCCATCGGATGCGGGTTCTCAATCTGCACCACAAGGAGCTGCGTCCTTGTCAGCCTAGGGTTCTTCAGGTTCCTTCTGGGACTGGGAATTGGGGGAGATTACCCATTGTCGGCGACCATAATGTCGGAGTTCGCCAACAAGAAGACACGTGGGGCGTTCATAGCGGCGGTGTTCTCGATGCAGGGATTCGGGATCTTGGCCAGCTCCACGGTGACCATGATCGTGTGCTCCATATTCGATCGGGCCTCCAATTACCCACCCAGTAATCATACCCCCATGGGGGCGGATATTGCTTGGAGGTTGATTCTCCTGCTCGGCGCTCTTCCGGCGGCGATGACTTATTACTGGCGAATGATGATGCCGGAAACCGCCAGATACACAGCTCTGGTTGAGCGGAATGTGGCACAAGCGGCGAAGGACATGGAGAAGGTGTTGGATGTGACGTTGGCTGATATCACCGAGGACAGCCCTGTTTCCCCTCCCCCTCCAAGTTTCCCCTTCTTTTCCAACGAATTTCTCCGTCGCCACGGCCGCGACCTTCTCTCCTGCGCCGCCGCTTGGTTCCTCGTCGACGTTGTGTTCTACAGCAGCAACCTCTTCCAATCCAGAATCTACACCCAATTCCTTCCCCCAAAACTCACCCGCAACGTCTACCAAGACGCCTTCAACGAAGCCAAACTCCAAGCCATCGTGGCCGTCTGTTCCACCATTCCTGGCTACTGGGTCTCCGTCTATTTCATCGACCGACTCGGCCGAGTCAAAATCCAAATCATGGGGTTTCTCTTCATGGGCATTGGCTATTTCGCCATCGCCATTCCCTACAACAGATACTGGGACTCCGATCACAAATTTGGCTTCATGGTAATCTACTGCCTCACATTCTTCTTCTCAAACTTCGGCCCCAACACCACCACTTTCATTCTCCCTGCCGAGCTCTTTCCCGCCAGGTTCAGATCCACCTGCCATGGAATCTCCGGCGCGGCTGGCAAAATCGGGGCCATCATCGGGGCCGTGGGGTTCCTTTGGGCTTCGCACGACCGGTGGGATAATGGAATTGGGATGCAGGCGTCGCTGATAATACTTGGTGGGGCGAGTCTGGTGGGAGTGGCGGTGACGTATTTGTTCACCAGAGAGACCACCGGAAGGTCGTTGGAAGAGAACGAGAAGGAAGATGAGTACGCTGGAGTCTGGTTTATAAGGTTTTCCTCCTGTCTGTCTGTTGGTGAACATGAGGACATGTCGTCACGTTCAACCGCCAACTCCATTCGAAGTAGTACACCAATTCATTAG 3195 52.36 MALPPAVPSAVATQSSGGSSGVGFTPHVITVEAGENGPRALCILTANGAISNVTLRQPAMCAGTVTYQGRFEILSLSGSYLFSENGTQRSRTGGLSVSLSGHRWWGGWSSNGCNSCSDTLTFPMRAFIYIFYSPMYGVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSVGTLSESSGGPGSPFNHSAGACNNNTKKRLMPLKNGTGPTSGRNAAQNMMLIPTTQNSHAYIVGPSRLFLFLFCQYEMVAAMPSFGVTIGGSIRGCGSHHLSSHGYNIVYNTAKNFPKRRALGTGRGVRWSSKLTVLQWIYFEHMHQHDHQLGNKRDCSRYALLNMQIIENSDKTVLGERNESHKKISMEASSARMIEVHASSDQGEAGRRSKARTWRAPLRTSSKQRAEPTKPSAPICSYNSRQPLTLADSKRGKTEPEGSISGGVSIKELVLGGPEVGFQPTPPNRFQYLVPSEGWRQGRNAPRFAYSRYLETLQKASSSSSIVHAPIQSNQTQPSAIEISILTMGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPVTTLVGRVYYQDKQYEIPAAVKSAMLAVALLGTATGQVVFGILGDRVGRRRVYGLALALMVLSSIGCGFSICTTRSCVLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASSTVTMIVCSIFDRASNYPPSNHTPMGADIAWRLILLLGALPAAMTYYWRMMMPETARYTALVERNVAQAAKDMEKVLDVTLADITEDSPVSPPPPSFPFFSNEFLRRHGRDLLSCAAAWFLVDVVFYSSNLFQSRIYTQFLPPKLTRNVYQDAFNEAKLQAIVAVCSTIPGYWVSVYFIDRLGRVKIQIMGFLFMGIGYFAIAIPYNRYWDSDHKFGFMVIYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDRWDNGIGMQASLIILGGASLVGVAVTYLFTRETTGRSLEENEKEDEYAGVWFIRFSSCLSVGEHEDMSSRSTANSIRSSTPIH 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 137993 145057 + CmaCh09G000270.1 Cma09g00027 300032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00027 1064 MobiDBLite consensus disorder prediction 386 449 - -
Cma09g00027 1064 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-9-RELATED 532 1027 - -
Cma09g00027 1064 CDD MFS_PhT 553 1014 - -
Cma09g00027 1064 SUPERFAMILY AF0104/ALDC/Ptd012-like 24 108 - -
Cma09g00027 1064 MobiDBLite consensus disorder prediction 1 20 - -
Cma09g00027 1064 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 532 1027 - -
Cma09g00027 1064 Gene3D - 28 119 - -
Cma09g00027 1064 MobiDBLite consensus disorder prediction 403 435 - -
Cma09g00027 1064 Pfam Sugar (and other) transporter 554 1023 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cma09g00027 1064 Pfam Plants and Prokaryotes Conserved (PCC) domain 33 114 IPR005175 -
Cma09g00027 1064 MobiDBLite consensus disorder prediction 175 206 - -
Cma09g00027 1064 Gene3D MFS general substrate transporter like domains 548 1031 IPR036259 -
Cma09g00027 1064 ProSitePatterns Sugar transport proteins signature 2. 660 685 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cma09g00027 1064 ProSiteProfiles Major facilitator superfamily (MFS) profile. 552 1015 IPR020846 GO:0022857
Cma09g00027 1064 MobiDBLite consensus disorder prediction 173 206 - -
Cma09g00027 1064 CDD DUF296 25 107 IPR005175 -
Cma09g00027 1064 SUPERFAMILY MFS general substrate transporter 539 1026 IPR036259 -
Cma09g00027 1064 ProSiteProfiles PPC domain profile profile. 8 155 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02039 Cma-Chr1:12986204 Cma09g00027 Cma-Chr9:137993 1.86E-67 dispersed
Cma09g00027 Cma-Chr9:137993 Cma17g00166 Cma-Chr17:859051 0 dispersed
Cma09g00027 Cma-Chr9:137993 Cma06g01328 Cma-Chr6:8742265 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00027 K08176 - csv:101218554 874.389