Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00033 ATGCGTCCCTTTAGGTACCTCGCCGGTGTGAACTCCTCTGCCATCTCCGACTCGGCTGAGCCCCAGACTTATGACTCTGACTTCGTCATAATCCTAGCTGCCCTCCTCTGTGCCTTGATATGCGTTCTCGGTCTAGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCACCTTGCCGGCAATGTCAGCGGCGGCGCTTCCACTCGTCCTCCTCCTCCTCCTCCTCCTGCGTCCAATAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACAACTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCAATCGGTGATGAAATCCGGGTGCTGCCACAGTGCGGCCATGGGTTTCACGTGTCCTGCATCGATATGTGGTTCCGATCTCACTCTTCATGTCCTTCGTGCCGTCAGATTCTTGTGGTAAGTCAGTGCCAGAAGTGCGGTGGTTTTCCGGCAAGCTCGAGTTCTAACGGTGGGACGGAATCCAGAGTGAAAGAGGGAGGAGATGTATGTTTTCCTGCTCATGTAATGGCATCCAATTGGACTCTGCGGTTACATTCTTATTCTTTCCAGCCATACGTATGGGTTGGAAAGCCTCTTGTTCTGTCCGTCTTATCCGAACTCGGAATTGGTTATAAATGCGCTGGCATTAGATATGGTCATTTCAACATTAACCGGAATCGGCATCGAATTGGTCGCAGATTTCTAATAAATTCGGCTGAGGGGTCCGGGAGCACTGATTCCGGGCGAAATGTCGAAGATGATGAAATTATGGTCAAGAGTGGGACTGGTGGTGTAGCTTCCAGAGATTACAAGGGGAAATTGCAGGAGATGATTTATTCGTCGCCTCCAGGCGTTTTCCTTATGAACAGATGTACTGGAAATGGTCTTGCAATTGGGTTTTGCATTGCGACGGCTTGTTTAGCAATAGTTGCAAGAGTGTATTTGATGGGAAAATCCAGGAGCAGTCATTCCGGATCAGTGGCTGATCTAGTCAGGCGTGGTCAGCTAAGATCTGACAGAAGAGGCATTTCCAAACCTTTAAAATACAATGATCCCTTTAACAATCCATTGGTGAAGGTTGACCAAAGCAATTCTTCCGTAGAAATGTGTGGAAAGGTTTATCGGTTGGCCCCGGTTACTCTTACGAAGGAAGAACAAAGTATTCATCAGAAACGGAGGTCTCGGGCATATCAGTGGAAGAGACCAACCATGTTTCTTAAGGAAGGAGATTCAATTCCTCCTGATGTTAACCCTGATACAATCAGTTGGATCCCTGCAAACCATCCGTTTGCAACAACATCTAGTGATATTGATGAAGACTTGGCCCAGAACAATGTGCACCAAAAGCATGGTGTTCCCTTCCGTATTCAGGCCGAGCATGACGCTTTGCAGAGAAAGCTTGAAGCGCTCCAGGGTGTGAGTAACTCTGATACTCTGTACTCGATTCTGTCTTGTCTTCATGCTCTTCCTTCAGTTGATAGATTCATATATAACATTTGCTGCGTGGTAATGGAACAGAAACTGAATAATTTATTTATAGATCCTAGAGATGGGAAGGATTTTGAGAGACCTGTTGAGTCCAAACCCAACTCTGATGAACAAGTAGAACAAAGCTTTACAGACCACCAAGCTGGAGAGTCGAAGCCTCCAAACTCGGGACATCTCCCAAGCTCTTTCGGGGTTCAATCCTCATCTGATGAAGCACAGAAATCCTGA 1752 47.77 MRPFRYLAGVNSSAISDSAEPQTYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGNVSGGASTRPPPPPPPASNKGLKKKILRSLPKYNFTAEFSAQFSDCAICLAEFAIGDEIRVLPQCGHGFHVSCIDMWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEGGDVCFPAHVMASNWTLRLHSYSFQPYVWVGKPLVLSVLSELGIGYKCAGIRYGHFNINRNRHRIGRRFLINSAEGSGSTDSGRNVEDDEIMVKSGTGGVASRDYKGKLQEMIYSSPPGVFLMNRCTGNGLAIGFCIATACLAIVARVYLMGKSRSSHSGSVADLVRRGQLRSDRRGISKPLKYNDPFNNPLVKVDQSNSSVEMCGKVYRLAPVTLTKEEQSIHQKRRSRAYQWKRPTMFLKEGDSIPPDVNPDTISWIPANHPFATTSSDIDEDLAQNNVHQKHGVPFRIQAEHDALQRKLEALQGVSNSDTLYSILSCLHALPSVDRFIYNICCVVMEQKLNNLFIDPRDGKDFERPVESKPNSDEQVEQSFTDHQAGESKPPNSGHLPSSFGVQSSSDEAQKS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 151504 156567 - CmaCh09G000330.1 Cma09g00033 300038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00033 583 SUPERFAMILY RING/U-box 89 152 - -
Cma09g00033 583 MobiDBLite consensus disorder prediction 543 583 - -
Cma09g00033 583 MobiDBLite consensus disorder prediction 526 542 - -
Cma09g00033 583 SMART ring_2 105 146 IPR001841 -
Cma09g00033 583 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Cma09g00033 583 MobiDBLite consensus disorder prediction 526 583 - -
Cma09g00033 583 CDD RING-H2_EL5_like 104 147 - -
Cma09g00033 583 Pfam Ring finger domain 104 147 IPR001841 -
Cma09g00033 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 151 IPR013083 -
Cma09g00033 583 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 188 487 IPR034572 GO:0009507|GO:0010020
Cma09g00033 583 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 516 581 IPR034572 GO:0009507|GO:0010020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02032 Cma09g00033 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00033 Cma-Chr9:151504 Cma15g00166 Cma-Chr15:766095 2.75E-34 dispersed
Cma03g00683 Cma-Chr3:5644422 Cma09g00033 Cma-Chr9:151504 7.80E-13 transposed
Cma06g00169 Cma-Chr6:839443 Cma09g00033 Cma-Chr9:151504 3.42E-57 transposed
Cma01g02032 Cma-Chr1:12962922 Cma09g00033 Cma-Chr9:151504 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00033 - - bhj:120087009 605.905