Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00038 ATGAGTTTCCTTTTGCTTCTTTCTTTGCTATCTCTCTGTTGTGGTAGTTTTTCTCTCGAATTTGGTAAGAACAGTTCCTCAAGACCATCGGTTGTGAACATTGGGGCTATTTTCTCTTTTGATTCCACCATTGGAAAAGTTGCTAAAATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCGGAATTCTTCCCGGAACCAAGCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATAAAACCGTAGCCATCATAGGCCCTCAGTCTTCTGTGGTTGCTCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTGGTCTCATTTTCAGCTACAGATCCTACTCTCTCTGCCCTTCAGTTTCCATTCTTCGTGAGGGCTGCGCAGAGTGATTTATTTCAAATGGCTGCAGTTGCTGAGATTGTTGATTATTATGGTTGGAAAGAGGTGATTGCTATATATGTGGATGATGATTATGGGTGGAACGGTATTGCAACATTGGGTGATAAACTTGCTGAGAAGCGTTGTAAAATCACATATAAAGTGGGTATTAGTCCAGAATCAGTGGTGACTCGAGCCCAAGTTTTGGATCAACTTGTTAAGGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAAATAGGCGCCGTAGTCTTTTCAGTGGCTAAATTCCTTCAAATGATGGGGAATGGATATGTATGGATAACAACTGATTGGCTTTCATCTCTACTAGATAGTGTTGTTCCTCTTCCTCTTGAGACCGTGGAGTCGATGCAAGGAGTTCTTTCTCTACGCCAGCACACAGCGGATTCAGATCAAAAGAAAGTTTTTCTTTCAAGGTGGAATAAGTTCACCGGTGGCTCTTTAGGTCTGAGTGCATATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCCACAAATTTCTTAATCAAGGTGGGATCATCACACATTATGATGATTCCAGACTGCATTTAAATGAAAGCGGTAATCTTCATCTTGAAGCTATGACTATCTTTGATGGCGGAAAACGCCTGCTGGATAACATATTGGAGAGTGACTTTGTTGGTTTGAGCGGTGCCATTAAATTTGATTCTGACAGATCCCTTCCTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTCTATCAGTTGATTCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCAAGCGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAATAGGTAAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTATTAAACATTGGAGTGCCACTTCGGGTCAGCTACAAGGAGTTTGTATCACGAATCAAAAGGACTGAAAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAGCTTATTACCTTACGCTGTCCCGCACCGATTCATAGCCTTTGGCGATGGCCATCATAATCCAAATTACACAGATCTTGTGTATGGGATCACAACTGGCAAATTTGATGCTGTTGTCGGAGACATGGCCATTGTCACGAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTGGTGGCTCCATTCCAAAAACTGAACACTGGTGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACCGCTAGTTTCTTCCTTTTTATCGGAATTGTTATCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGTCCACCTAAAAAACAATGTATTACAATTCTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCACAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGTTCTTTGTGGTTTTGATAATAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGACGAAAGGTGGCGAACCGATAGGCTTTCAAGTTGGATCGTTCGCTGAACGTTATCTGAGTGAGGAGCTGAACATATCTAAATCGAGGCTTTTTGCTCTTGGATCACCGGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGGGGGTGTTGCTGCTATAGTTGACGAACGTCCATATGTAGAAAGTTTCCTGTCGAGACAGTGCACATTCAGAGTTGTTGGTCAAGAGTTTACAAAAAGTGGCTGGGGTTTCGCATTCCCCAGAGATTCTCCCTTGGCTGTAGACTTGTCGACGGCCATTTTGCAGCTCTCGGAGAACGGCGATCTTCAACGGATTCATGATAAATGGCTAATGAAAAGCGCCTGCAGCATGGACAGTGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTCTTTCTAATATGTGGGATAGTCTGTTTCATTTCTCTTGCCATATACTGCTTTCAGATTATTCGTCAGCTATACCGTTCTGATGAGAAAGGATCTGATCTGTCCATCAATAGTGGATCACATTCTAATCGTCTTCGACGAATTATATCATTGATGGATGAGAAAAAAGAACCTTCTAAAAGAGAAAGCAAACGAAGGAAAGTTGAGAAATCATTTGAAAATGATAGGGATGATGATCAGTTGGAGATCAATCCCTGA 2754 42.81 MSFLLLLSLLSLCCGSFSLEFGKNSSSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPGILPGTKLWLQMQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMAAVAEIVDYYGWKEVIAIYVDDDYGWNGIATLGDKLAEKRCKITYKVGISPESVVTRAQVLDQLVKVALMESRVMVLHVNPKIGAVVFSVAKFLQMMGNGYVWITTDWLSSLLDSVVPLPLETVESMQGVLSLRQHTADSDQKKVFLSRWNKFTGGSLGLSAYGLYAYDSVWVVAHAIHKFLNQGGIITHYDDSRLHLNESGNLHLEAMTIFDGGKRLLDNILESDFVGLSGAIKFDSDRSLPHPAYDIINVIGTGSRRVGYWSNYSGLSVDSPETLYSKPPNRSSANQKLYEVIWPGNTIGKPRGWVFPNNGKLLNIGVPLRVSYKEFVSRIKRTENFQGFCIDVFTAAVSLLPYAVPHRFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDMAIVTSRTRLVDFTLPYTASGLVVVAPFQKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVIWILEHRTNDEFRGPPKKQCITILWFSFSTLFFAHKENTISTLGRLVLIIWFFVVLIINSSYTASLTSILTVQQLYSPITGIETLTKGGEPIGFQVGSFAERYLSEELNISKSRLFALGSPEEYAKALELGPDKGGVAAIVDERPYVESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAVDLSTAILQLSENGDLQRIHDKWLMKSACSMDSAELESDRLQLKSFWGLFLICGIVCFISLAIYCFQIIRQLYRSDEKGSDLSINSGSHSNRLRRIISLMDEKKEPSKRESKRRKVEKSFENDRDDDQLEINP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 166741 169960 - CmaCh09G000380.1 Cma09g00038 300043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00038 917 CDD GluR_Plant 466 808 - -
Cma09g00038 917 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Cma09g00038 917 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Cma09g00038 917 PIRSF IGluLR_plant 1 916 IPR017103 -
Cma09g00038 917 Gene3D - 463 578 - -
Cma09g00038 917 MobiDBLite consensus disorder prediction 882 917 - -
Cma09g00038 917 Gene3D - 147 421 - -
Cma09g00038 917 Gene3D - 751 815 - -
Cma09g00038 917 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Cma09g00038 917 PANTHER GLUTAMATE RECEPTOR 3.3 13 916 - -
Cma09g00038 917 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Cma09g00038 917 SUPERFAMILY Periplasmic binding protein-like I 26 460 IPR028082 -
Cma09g00038 917 Gene3D - 579 711 - -
Cma09g00038 917 Gene3D - 50 396 - -
Cma09g00038 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 916 - -
Cma09g00038 917 CDD PBP1_GABAb_receptor_plant 33 423 IPR044440 -
Cma09g00038 917 Pfam Bacterial extracellular solute-binding proteins, family 3 488 808 IPR001638 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02028 Cma09g00038 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00166 Cma-Chr2:764297 Cma09g00038 Cma-Chr9:166741 0 dispersed
Cma03g00620 Cma-Chr3:5405784 Cma09g00038 Cma-Chr9:166741 0 dispersed
Cma09g00038 Cma-Chr9:166741 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma20g00622 Cma-Chr20:2895161 Cma09g00038 Cma-Chr9:166741 0 dispersed
Cma01g02028 Cma-Chr1:12944004 Cma09g00038 Cma-Chr9:166741 0 wgd
Cma07g00382 Cma-Chr7:1636511 Cma09g00038 Cma-Chr9:166741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00038 K05387 - csv:101204862 1576.22