Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00041 ATGGCCACGGGTTTAGATTTTTCACCTCCCTTCACCCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAGTAGTTTGAAACAGATGACCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGGCATAGTGTGAGCTCCATAAAGCTCCTTGGTCAAGCTGACTTGAGCTTGGATGCAGAAACTCTTGGGAATAAGTCGCCTGATGGGAAAACAGGATTCTTACCTGTCTTGAGATCGGGTAGCTGTTCAGAAAAAGGACCTAAGCAGTACATGGAAGATGAACACATATGCATAGATGATCTTGTTGAACATATCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCGTTCTATGGTGTATTTGATGGCCATGGGGGTACAGATGCCGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATTGTGGAGGACTCCTGTTTTCCAATTAGTGTAGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACTACTGCCCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGTGCTGTTCTGGGTAGGAGGGGCAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCATCTGAAAAACTCAGAATTGAGAAGCTTGGTGGGGTGATATATGATGGCTATCTCAATGGCCAGTTATCTGTTGCGCGTGCTATAGGAGATTGGCACATGAAAGGTGCCAAGGGTTCTGCTTGCCCACTGAGTGCAGAGCCAGAGCTGCAGGAATTGAATCTGACGGAGGAAGATGAATTTCTAATAATGGGGTGCGATGGGCTTTGGGATGTTATGAGCAGTCAGTATGCTATTACAATGGCAAGGAAAGAGCTAATGCTACACAACGATCCAGAAAGATGTTCAAGAGAGCTGGTAAGGGAGGCGCTAAAGCGCAATACGTGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCCACTGATCCGCCCCCTCGGATAGAAATACCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCATGA 1161 45.39 MATGLDFSPPFTLLEGGGYNKDNVSATDDESSDSFSSLKQMTSGKPPRHLSVMRHSVSSIKLLGQADLSLDAETLGNKSPDGKTGFLPVLRSGSCSEKGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAITMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSTDPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 172537 175409 + CmaCh09G000410.1 Cma09g00041 300046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00041 386 MobiDBLite consensus disorder prediction 18 49 - -
Cma09g00041 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cma09g00041 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Cma09g00041 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Cma09g00041 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cma09g00041 386 Gene3D - 77 354 IPR036457 -
Cma09g00041 386 SMART PP2C_4 81 349 IPR001932 -
Cma09g00041 386 MobiDBLite consensus disorder prediction 29 44 - -
Cma09g00041 386 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Cma09g00041 386 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 373 - -
Cma09g00041 386 CDD PP2Cc 91 351 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02027 Cma09g00041 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01243 Cma-Chr5:9542146 Cma09g00041 Cma-Chr9:172537 6.57E-109 dispersed
Cma08g00490 Cma-Chr8:2784677 Cma09g00041 Cma-Chr9:172537 2.85E-103 dispersed
Cma09g00041 Cma-Chr9:172537 Cma12g01161 Cma-Chr12:9161099 3.62E-109 dispersed
Cma17g00902 Cma-Chr17:6820003 Cma09g00041 Cma-Chr9:172537 3.08E-38 dispersed
Cma11g00294 Cma-Chr11:1455272 Cma09g00041 Cma-Chr9:172537 4.31E-35 transposed
Cma01g02027 Cma-Chr1:12939420 Cma09g00041 Cma-Chr9:172537 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35574 PF00481 PP2C 1.30E-72 CL0238 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00041 K14803 - csv:101205355 759.214