Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00044 ATGGATCAGTTCGACGCATTCTTTCGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACTGGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACACCTGAAATTGTTAAGGCAGCACTCTATGGTCCTGCTGCAGCGAAAATCCCCCCACCCAAGATTGATCTTTCGGCTGTATCTGCCACTCAATCAACTTCAGTGACTGCTGCATCTCCTCCACAGATGAGTATGCCTGCGCCAACGGCACCTCAAAATTTTGGCTTTAGGGGACAAGGGGTTCCAAACGTGGGTGTGAATCCGCAGTATGTTTCAGCCCAGCCAAATCCTTCCATGAGGTTACCTCAAGGCACACCTGGTGGTGTTGCTTCCAACACGCAACTGGTTATTGCTGCCTCTGAATCCTCAGGAGGAGGAAATGTACTGGGTTCAAATCTTTCAAACCCAAATGGTTGGCTCACGCCAGGTGGTGGCCCTGCTGCTGGGCCTAGGGGAGTTAGCCCTTCTGTGGCTTCCCCAGCTACATCGTTATCACCAGCTTTAATGACTTCACAGCCTATGCATAATAATACAGCACCAGCTGTTACTGGTAACGGATTTGCTTCTAAGTCGGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCTCCACCTACACCAGAATCTTCTGGACTCAACAATGCAGCCAATAGTGGTACTGGTCCATCAGCGTTTGTTGCAGGTTCCAGTGTATCCCAGCCTTTAAGTAAGCACAACTCCATGGAGTCATTGCAGAGTGCATTTGTTTCAAGACCAATATCTGATTCACAGTTGCAGCTCTCTCAGACATCATTGGAACCTAGCAAGGAGGTTCGAGCAACCAGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCTACTTCTGAAAATACACAGCTTACTTGGCCAAAAATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAAAGATGGTAGAATTACCGGTGAGCAGGCACGGAATCTATTTTTAAGTTGGAGATTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTTAGAGAGTTTTGTTTTGCTTTATATCTCATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGTGCTTCCAAGTAATCTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAATCTAACATTGTCCATCCGAATGCAGCTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCAACCTCAGGTCACTGCTCGGTCAATGGCACCAACTGTAGGATTGAGGCCCCCAACACATGTACTTGCTTCGAAGGTCGATGGTGCTAAACTATCCAATGAGCAGAAATCAAGGGCTCCAGTGTTGGAGGATTCATTTCTGGACAATTCTGAGAAGGGCCAACAAAATTCGGCTAGTTTAAATGCTCAAGATGCTACAGAAGCATCTGGGAAAATGGTTGGAGAGACAGCGAATGTTATTTTGGACTCAAAAGAAAAGATTAAATTCTATCGAACGATGATGCAGGAAATTGTTCTACATAAGAGCAGATGTAATAATAGATTAAATGAGATCACAGAAAGGGGATCTGCTGACAAGAGTGAGGCAGAATCCTTAGGAAAGAAATATGAAGAGAAGTACAAGCAAGTGGCTGAAATAGCATCTAAGTTAACCATTGAAGAAGCAAAATATCGTGATGTTCAAGAAAGGAAGACAGAGTTGCATCAAGCAATTATTAATATAGAACAAGGAGGAAGTGCTGATGGTATCCTCCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAATCGGCTGCTATAATCGAGCTTCCAGTAGGTTGGCAACCTGGAATTCCGGATGATGCAGCTATTTGGGATGAAGAATGGGATAAATTTGAAGATGAAGGATTTTCCAATGATCTTAACTTCGATACAAAAGGTGTTTCTGCCTCAAAACCAAAAATGTCAGAAAGTCAGGGTGAAAAGGGTCTAGCAGATTATAATTCGACTCCTGATTCATCGTCAAATGCCAATGAAAAAACAGGGAACTCCTTGAGTACCATCAATCATGGCCTTGAGAGTGATTCTGTGTATAGTCACAGTGAAGATGAATTAGCTAAAAGTCCATATGGCAGCCCTGCTGCAAAGACATCTCTCGAAAGCCCTTCTCATGAATTTTCAGATGCAGGTTATGAAAAGAGTCCGGAAGCATATAGAAGTTTTAATGAGTCCGCTTGGGGCGCATTTGACAATAATGATGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCTGAAAAACACAGAGATTTCTTTGGAAACAGTGATTTTGATACTAGCTCCGTCAAAACTGGATCCCCGAATGCAGATAGCTTCTTTCAGAGAAAAAGCCCATTTTTTGATGATTCTGTCCCTCCCACTCCCCTCTCTAGATTCGGCAACTCTTCCCCTCGTTACAGCGATGTGGGGGATCACTTCTTTGACCATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATAGCAGCTTTTCTCCGCAACGTGAGAAGTTCACGAGGTTCGATTCAATAAGCAGTTCTCGAGATTTTGGCCATAATCAAGAGAAGTTCTCAAGGTTTGATTCTATGAGTAGTAGCATGGACTTCGGCCAGAGTAGCCAGAGGCACGCCAGGTTTGACTCCATTGACAGCTCCAGAGATTTCGGCCACGGCCATGGCGCCTTCTCTTTTGATGATACAGATCCATTTGGTACCTCTGGCCCGTTTAAAGTCTCATCAGAGAGTCAAAGTCCGAAGAAAAGCTCCGACAATTGGAGAGCTTTTTAA 3075 44.29 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLPKNVLAQIWMHADQRKTGFLGRLEFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLSAVSATQSTSVTAASPPQMSMPAPTAPQNFGFRGQGVPNVGVNPQYVSAQPNPSMRLPQGTPGGVASNTQLVIAASESSGGGNVLGSNLSNPNGWLTPGGGPAAGPRGVSPSVASPATSLSPALMTSQPMHNNTAPAVTGNGFASKSAFGADMFSVTPSPPTPESSGLNNAANSGTGPSAFVAGSSVSQPLSKHNSMESLQSAFVSRPISDSQLQLSQTSLEPSKEVRATSPSPLISSGITTGARNSTSENTQLTWPKMKPTDVQKYTKVFMEVDTDKDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAVLPSNLMFDETLLSMTGQSNIVHPNAAWGPRPGFGQQQPQVTARSMAPTVGLRPPTHVLASKVDGAKLSNEQKSRAPVLEDSFLDNSEKGQQNSASLNAQDATEASGKMVGETANVILDSKEKIKFYRTMMQEIVLHKSRCNNRLNEITERGSADKSEAESLGKKYEEKYKQVAEIASKLTIEEAKYRDVQERKTELHQAIINIEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDDAAIWDEEWDKFEDEGFSNDLNFDTKGVSASKPKMSESQGEKGLADYNSTPDSSSNANEKTGNSLSTINHGLESDSVYSHSEDELAKSPYGSPAAKTSLESPSHEFSDAGYEKSPEAYRSFNESAWGAFDNNDDVDSVWGIKPVNTKEPDSEKHRDFFGNSDFDTSSVKTGSPNADSFFQRKSPFFDDSVPPTPLSRFGNSSPRYSDVGDHFFDHSSRFDSFSMQDSSFSPQREKFTRFDSISSSRDFGHNQEKFSRFDSMSSSMDFGQSSQRHARFDSIDSSRDFGHGHGAFSFDDTDPFGTSGPFKVSSESQSPKKSSDNWRAF 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 180144 190421 - CmaCh09G000440.1 Cma09g00044 300049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00044 1024 MobiDBLite consensus disorder prediction 252 292 - -
Cma09g00044 1024 SMART eh_3 354 449 IPR000261 GO:0005515
Cma09g00044 1024 SMART eh_3 2 88 IPR000261 GO:0005515
Cma09g00044 1024 MobiDBLite consensus disorder prediction 189 237 - -
Cma09g00044 1024 Gene3D - 1 96 - -
Cma09g00044 1024 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 949 1024 - -
Cma09g00044 1024 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 949 - -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 844 858 - -
Cma09g00044 1024 PANTHER EH DOMAIN 949 1024 - -
Cma09g00044 1024 PANTHER EH DOMAIN 1 949 - -
Cma09g00044 1024 Pfam EF hand 5 21 IPR002048 GO:0005509
Cma09g00044 1024 SMART efh_1 3 31 IPR002048 GO:0005509
Cma09g00044 1024 SMART efh_1 37 65 IPR002048 GO:0005509
Cma09g00044 1024 SMART efh_1 364 392 IPR002048 GO:0005509
Cma09g00044 1024 SMART efh_1 398 426 IPR002048 GO:0005509
Cma09g00044 1024 MobiDBLite consensus disorder prediction 713 810 - -
Cma09g00044 1024 SUPERFAMILY EF-hand 351 444 IPR011992 -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 524 540 - -
Cma09g00044 1024 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Cma09g00044 1024 MobiDBLite consensus disorder prediction 838 872 - -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 1002 1024 - -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 953 974 - -
Cma09g00044 1024 SUPERFAMILY EF-hand 2 79 IPR011992 -
Cma09g00044 1024 Gene3D - 355 444 - -
Cma09g00044 1024 ProSiteProfiles EH domain profile. 361 444 IPR000261 GO:0005515
Cma09g00044 1024 CDD EH 4 70 IPR000261 GO:0005515
Cma09g00044 1024 MobiDBLite consensus disorder prediction 720 773 - -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 256 292 - -
Cma09g00044 1024 CDD EH 365 431 IPR000261 GO:0005515
Cma09g00044 1024 MobiDBLite consensus disorder prediction 953 980 - -
Cma09g00044 1024 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Cma09g00044 1024 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Cma09g00044 1024 MobiDBLite consensus disorder prediction 524 543 - -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 313 352 - -
Cma09g00044 1024 MobiDBLite consensus disorder prediction 210 237 - -
Cma09g00044 1024 Pfam Cytoskeletal-regulatory complex EF hand 355 426 IPR000261 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00044 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1658.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02025 Cma09g00044 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00044 Cma-Chr9:180144 Cma11g01331 Cma-Chr11:8820271 7.16E-07 dispersed
Cma09g00044 Cma-Chr9:180144 Cma01g02025 Cma-Chr1:12926790 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00044 Cma_Chr09 FPKM 21.822512 22.161823 17.098511 15.886041 16.012627 14.524915 16.074146 16.179127 16.373604 16.942827